RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 XAGE1AQ9HD64 81 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 DSCAML1Q8TD84 2053 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 E7EUB6 86 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 NDUFA1O15239 70 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 C4orf26Q17RF5 130 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 GPHB5Q86YW7 130 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 CADP27708 2225 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 MSRB1Q9NZV6 116 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 EML6Q6ZMW3 1958 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 SPINK1P00995 79 aa4.84□□□□□ -1.64
VPS35-201ENST00000299138 TMEM223A0PJW6 202 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 ATP6V0E1O15342 81 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 CCKP06307 115 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 POLR2KP53803 58 aaKnown RBP4.83□□□□□ -1.64
VPS35-201ENST00000299138 MRGPRG-AS1Q2M3A8 158 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 GYPEP15421 78 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 MIAQ16674 131 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 LYPD2Q6UXB3 125 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 Q6ZQY7 126 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 ZNF73O43830 326 aaPredicted RBP4.83□□□□□ -1.64
VPS35-201ENST00000299138 DNAH12Q6ZR08 3092 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 C20orf203Q8NBC4 194 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 GTF3C1Q12789 2109 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 INSL3P51460 131 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 NCKAP5O14513 1909 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 E7EQL1 145 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 G3V318 75 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 PLA2G5P39877 138 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 NRGNQ92686 78 aa4.83□□□□□ -1.64
VPS35-201ENST00000299138 IGHV7-81A0A0B4J1V7 117 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 TRIAP1O43715 76 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 APOC4P55056 127 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 DSCR9P59020 149 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 RUSC1-AS1Q66K80 236 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 LINC00269Q8N2A0 174 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 Q8N9W7 124 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 DMDP11532 3685 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 A0A0G2JNJ9 132 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 K7EQD1 137 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 Q9UFV3 132 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 CACNA1HO95180 2353 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 APC2O95996 2303 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 TRBV7-7A0A0K0K1E9 115 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 PRYO14603 147 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 LINC00208Q96KT6 92 aa4.82□□□□□ -1.64
VPS35-201ENST00000299138 DCANP1Q8TF63 244 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 SPTBN1Q01082 2364 aaKnown RBP4.81□□□□□ -1.64
VPS35-201ENST00000299138 TTC28Q96AY4 2481 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 CUL9Q8IWT3 2517 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 PCOTHQ58A44 107 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 MUC7Q8TAX7 377 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 RETNLBQ9BQ08 111 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 USP34Q70CQ2 3546 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 KIAA1549Q9HCM3 1950 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 K7ENP7 123 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 IGKV2-24A0A0C4DH68 120 aa4.81□□□□□ -1.64
VPS35-201ENST00000299138 SAA4P35542 130 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 ZNF80P51504 273 aaPredicted RBP4.8□□□□□ -1.64
VPS35-201ENST00000299138 POLEQ07864 2286 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 CEMP1Q6PRD7 247 aaPredicted RBP4.8□□□□□ -1.64
VPS35-201ENST00000299138 TRAV7A0A075B6U4 112 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 BCE1O60756 84 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 FAM19A1Q7Z5A9 133 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 TMEM254Q8TBM7 123 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 IGIPA6NJ69 53 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 A0A087WVE0 104 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 TRBV10-1A0A0K0K1A3 114 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 KLLNB2CW77 178 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 CXCL6P80162 114 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 ZFAND2AQ8N6M9 145 aa4.8□□□□□ -1.64
VPS35-201ENST00000299138 DEFB136Q30KP8 78 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 LINC00526Q96FQ7 95 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 CDIP1Q9H305 208 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 DNAH14Q0VDD8 3507 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 MAP1BP46821 2468 aaKnown RBP4.79□□□□□ -1.64
VPS35-201ENST00000299138 LY6HO94772 140 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 LST1O00453 97 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 Q9UF83 564 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 MED12LQ86YW9 2145 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 PCDH15Q96QU1 1955 aa4.79□□□□□ -1.64
VPS35-201ENST00000299138 H7C423 109 aa4.78□□□□□ -1.64
VPS35-201ENST00000299138 RPS28P62857 69 aaKnown RBP4.78□□□□□ -1.64
VPS35-201ENST00000299138 LINC00467Q9BRT7 94 aa4.78□□□□□ -1.64
VPS35-201ENST00000299138 C5orf56Q8N8D9 126 aa4.78□□□□□ -1.64
VPS35-201ENST00000299138 MAPKAPK5-AS1Q8N8E1 139 aa4.78□□□□□ -1.64
VPS35-201ENST00000299138 AJUBAQ96IF1 538 aa4.78□□□□□ -1.64
VPS35-201ENST00000299138 ZNF22P17026 224 aaPredicted RBP4.78□□□□□ -1.64
VPS35-201ENST00000299138 KLK12Q9UKR0 248 aa4.78□□□□□ -1.64
VPS35-201ENST00000299138 CNOT1A5YKK6 2376 aaKnown RBP4.77□□□□□ -1.65
VPS35-201ENST00000299138 A0A087WZ39 114 aa4.77□□□□□ -1.65
VPS35-201ENST00000299138 SPRNQ5BIV9 151 aa4.77□□□□□ -1.65
VPS35-201ENST00000299138 F8W735 103 aaPredicted RBP4.77□□□□□ -1.65
VPS35-201ENST00000299138 SMAD5-AS1Q9Y6J3 95 aa4.77□□□□□ -1.65
VPS35-201ENST00000299138 TNCP24821 2201 aa4.77□□□□□ -1.65
VPS35-201ENST00000299138 PIEZO1Q92508 2521 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 RIF1Q5UIP0 2472 aaKnown RBP4.76□□□□□ -1.65
VPS35-201ENST00000299138 C8orf87E5RJ46 101 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 ESRGQ1W209 222 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 ARHGAP21Q5T5U3 1957 aa4.76□□□□□ -1.65
VPS35-201ENST00000299138 FAM19A4Q96LR4 140 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms