RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CDC42SE2Q9NRR3 84 aa8.46□□□□□ -1.05
SS18-202ENST00000269138 EPPK1P58107 5090 aaKnown RBP8.45□□□□□ -1.06
SS18-202ENST00000269138 LECT2O14960 151 aa8.45□□□□□ -1.06
SS18-202ENST00000269138 FUSP35637 526 aaKnown RBP eCLIP8.45□□□□□ -1.06
SS18-202ENST00000269138 RNASE13Q5GAN3 156 aaKnown RBP8.45□□□□□ -1.06
SS18-202ENST00000269138 PRSS3P2Q8NHM4 247 aa8.45□□□□□ -1.06
SS18-202ENST00000269138 BAALCQ8WXS3 180 aa8.45□□□□□ -1.06
SS18-202ENST00000269138 FAM104AQ969W3 186 aa8.45□□□□□ -1.06
SS18-202ENST00000269138 TMEM18Q96B42 140 aa8.45□□□□□ -1.06
SS18-202ENST00000269138 COLCA2A8K830 154 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 KRTAP10-2P60368 255 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 DGAT2L7PQ6IED9 249 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 ZNF664Q8N3J9 261 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 OPRPNQ99935 248 aaPredicted RBP8.44□□□□□ -1.06
SS18-202ENST00000269138 TIMM21Q9BVV7 248 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 COX11Q9Y6N1 276 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 PKD1P98161 4303 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 DNAH11Q96DT5 4516 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 HECTD4Q9Y4D8 3996 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 Q6ZUT4 128 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 SPATA12Q7Z6I5 190 aa8.44□□□□□ -1.06
SS18-202ENST00000269138 CSDC2Q9Y534 153 aaKnown RBP8.44□□□□□ -1.06
SS18-202ENST00000269138 ORMDL2Q53FV1 153 aa8.43□□□□□ -1.06
SS18-202ENST00000269138 C18orf32Q8TCD1 76 aa8.43□□□□□ -1.06
SS18-202ENST00000269138 TRAV8-4A0A0B4J246 113 aa8.42□□□□□ -1.06
SS18-202ENST00000269138 LINC00959A0A1B0GUT2 108 aa8.42□□□□□ -1.06
SS18-202ENST00000269138 LINC01546A6NGU7 62 aa8.42□□□□□ -1.06
SS18-202ENST00000269138 SMAGPQ0VAQ4 97 aa8.42□□□□□ -1.06
SS18-202ENST00000269138 C2orf66Q6UXQ4 117 aa8.42□□□□□ -1.06
SS18-202ENST00000269138 URB1-AS1Q96HZ7 61 aa8.42□□□□□ -1.06
SS18-202ENST00000269138 SPANXA1Q9NS26 97 aa8.42□□□□□ -1.06
SS18-202ENST00000269138 GAGE12HA6NDE8 117 aa8.41□□□□□ -1.06
SS18-202ENST00000269138 K7EMI3 77 aa8.41□□□□□ -1.06
SS18-202ENST00000269138 EREGO14944 169 aa8.41□□□□□ -1.06
SS18-202ENST00000269138 TRGC2P03986 189 aa8.41□□□□□ -1.06
SS18-202ENST00000269138 FA2HQ7L5A8 372 aa8.41□□□□□ -1.06
SS18-202ENST00000269138 CHCHD10Q8WYQ3 142 aaPredicted RBP8.41□□□□□ -1.06
SS18-202ENST00000269138 CYSLTR1Q9Y271 337 aa8.41□□□□□ -1.06
SS18-202ENST00000269138 ATP6V1G1O75348 118 aa8.4□□□□□ -1.06
SS18-202ENST00000269138 IGLV4-3A0A075B6K6 122 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 CCL25O15444 150 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 MRPS36P82909 103 aaKnown RBP8.39□□□□□ -1.07
SS18-202ENST00000269138 Q8N814 137 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 PYGO1Q9Y3Y4 419 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 TRAV13-1A0A0B4J241 112 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 IGIPA6NJ69 53 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 USP17L23D6RBM5 183 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 XCL1P47992 114 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 ZC2HC1BQ5TFG8 222 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 TOMM6Q96B49 74 aa8.39□□□□□ -1.07
SS18-202ENST00000269138 LINC00614P0C842 121 aa8.38□□□□□ -1.07
SS18-202ENST00000269138 FOXI1Q12951 378 aa8.38□□□□□ -1.07
SS18-202ENST00000269138 SS18Q15532 418 aa8.38□□□□□ -1.07
SS18-202ENST00000269138 S100A1P23297 94 aa8.37□□□□□ -1.07
SS18-202ENST00000269138 AP5S1Q9NUS5 200 aa8.37□□□□□ -1.07
SS18-202ENST00000269138 PGPEP1Q9NXJ5 209 aa8.37□□□□□ -1.07
SS18-202ENST00000269138 PKHD1P08F94 4074 aa8.37□□□□□ -1.07
SS18-202ENST00000269138 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.36□□□□□ -1.07
SS18-202ENST00000269138 A0A096LNJ9 63 aa8.36□□□□□ -1.07
SS18-202ENST00000269138 C16orf90A8MZG2 172 aa8.36□□□□□ -1.07
SS18-202ENST00000269138 G0S2P27469 103 aa8.36□□□□□ -1.07
SS18-202ENST00000269138 PMCHL1Q16048 86 aa8.36□□□□□ -1.07
SS18-202ENST00000269138 TMEM141Q96I45 108 aa8.36□□□□□ -1.07
SS18-202ENST00000269138 SCGB3A1Q96QR1 104 aa8.36□□□□□ -1.07
SS18-202ENST00000269138 IFITM10A6NMD0 228 aa8.35□□□□□ -1.07
SS18-202ENST00000269138 C1orf196B1AJZ1 125 aa8.35□□□□□ -1.07
SS18-202ENST00000269138 PRSS1P07477 247 aa8.35□□□□□ -1.07
SS18-202ENST00000269138 CD164L2Q6UWJ8 174 aa8.35□□□□□ -1.07
SS18-202ENST00000269138 LINC00173Q6ZV60 143 aa8.35□□□□□ -1.07
SS18-202ENST00000269138 RAB5BP61020 215 aa8.34□□□□□ -1.07
SS18-202ENST00000269138 ERASQ7Z444 233 aa8.34□□□□□ -1.07
SS18-202ENST00000269138 AMELXQ99217 191 aa8.34□□□□□ -1.07
SS18-202ENST00000269138 TIMM17AQ99595 171 aa8.34□□□□□ -1.07
SS18-202ENST00000269138 IGLV5-52A0A0A0MRZ9 124 aa8.34□□□□□ -1.08
SS18-202ENST00000269138 TEX43Q6ZNM6 134 aa8.34□□□□□ -1.08
SS18-202ENST00000269138 C15orf56Q8N910 161 aa8.34□□□□□ -1.08
SS18-202ENST00000269138 NTN5Q8WTR8 489 aaPredicted RBP8.34□□□□□ -1.08
SS18-202ENST00000269138 VCX2Q9H322 139 aa8.34□□□□□ -1.08
SS18-202ENST00000269138 DYNC1H1Q14204 4646 aaKnown RBP8.33□□□□□ -1.08
SS18-202ENST00000269138 BIRC6Q9NR09 4857 aa8.33□□□□□ -1.08
SS18-202ENST00000269138 NPSP0C0P6 89 aa8.33□□□□□ -1.08
SS18-202ENST00000269138 C14orf177Q52M58 125 aa8.33□□□□□ -1.08
SS18-202ENST00000269138 CDPF1Q6NVV7 123 aa8.33□□□□□ -1.08
SS18-202ENST00000269138 Q6ZN92 141 aa8.33□□□□□ -1.08
SS18-202ENST00000269138 C5orf38Q86SI9 138 aa8.33□□□□□ -1.08
SS18-202ENST00000269138 BAGE3Q86Y29 109 aa8.33□□□□□ -1.08
SS18-202ENST00000269138 HBDP02042 147 aa8.32□□□□□ -1.08
SS18-202ENST00000269138 UBE2D1P51668 147 aa8.32□□□□□ -1.08
SS18-202ENST00000269138 KRTAP10-1P60331 282 aa8.32□□□□□ -1.08
SS18-202ENST00000269138 COX6A2Q02221 97 aa8.32□□□□□ -1.08
SS18-202ENST00000269138 LINC01620Q4KN68 170 aa8.32□□□□□ -1.08
SS18-202ENST00000269138 LINC00242Q5T6M2 205 aa8.32□□□□□ -1.08
SS18-202ENST00000269138 hDV102S1A0JD36 115 aa8.31□□□□□ -1.08
SS18-202ENST00000269138 LINC00310P59036 64 aa8.31□□□□□ -1.08
SS18-202ENST00000269138 HIGD2BQ4VC39 106 aa8.31□□□□□ -1.08
SS18-202ENST00000269138 PDZD11Q5EBL8 140 aa8.31□□□□□ -1.08
SS18-202ENST00000269138 CFAP161Q6P656 301 aa8.31□□□□□ -1.08
SS18-202ENST00000269138 CHCHD1Q96BP2 118 aaKnown RBP8.31□□□□□ -1.08
SS18-202ENST00000269138 C2orf88Q9BSF0 95 aa8.31□□□□□ -1.08
SS18-202ENST00000269138 DNAH5Q8TE73 4624 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms