RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 B4DSR2 109 aa8.96□□□□□ -0.98
NUP88-201ENST00000225696 LST1O00453 97 aa8.96□□□□□ -0.98
NUP88-201ENST00000225696 JMJD1CQ15652 2540 aa8.95□□□□□ -0.98
NUP88-201ENST00000225696 ACACBO00763 2458 aa8.95□□□□□ -0.98
NUP88-201ENST00000225696 SPANXA1Q9NS26 97 aa8.95□□□□□ -0.98
NUP88-201ENST00000225696 WNK1Q9H4A3 2382 aa8.95□□□□□ -0.98
NUP88-201ENST00000225696 ABCA12Q86UK0 2595 aa8.95□□□□□ -0.98
NUP88-201ENST00000225696 IFITM1P13164 125 aa8.95□□□□□ -0.98
NUP88-201ENST00000225696 C11orf72Q8NBR9 251 aa8.95□□□□□ -0.98
NUP88-201ENST00000225696 IGHV3OR16-12A0A075B7B8 117 aa8.94□□□□□ -0.98
NUP88-201ENST00000225696 LINC00694P0DN24 101 aa8.94□□□□□ -0.98
NUP88-201ENST00000225696 Q8N2B8 174 aa8.94□□□□□ -0.98
NUP88-201ENST00000225696 FAM208BQ5VWN6 2430 aa8.94□□□□□ -0.98
NUP88-201ENST00000225696 COX6CP09669 75 aa8.93□□□□□ -0.98
NUP88-201ENST00000225696 SOSTDC1Q6X4U4 206 aa8.93□□□□□ -0.98
NUP88-201ENST00000225696 PTPN13Q12923 2485 aa8.93□□□□□ -0.98
NUP88-201ENST00000225696 TMEM89A2RUT3 159 aa8.93□□□□□ -0.98
NUP88-201ENST00000225696 H3BT86 120 aa8.93□□□□□ -0.98
NUP88-201ENST00000225696 Q9H8V8 135 aa8.93□□□□□ -0.98
NUP88-201ENST00000225696 ZNF702PQ9H963 129 aa8.93□□□□□ -0.98
NUP88-201ENST00000225696 SETXQ7Z333 2677 aaKnown RBP8.92□□□□□ -0.98
NUP88-201ENST00000225696 SVIPQ8NHG7 77 aa8.92□□□□□ -0.98
NUP88-201ENST00000225696 LINC01587Q99440 93 aa8.92□□□□□ -0.98
NUP88-201ENST00000225696 LRRK2Q5S007 2527 aa8.92□□□□□ -0.98
NUP88-201ENST00000225696 NDUFA1O15239 70 aa8.92□□□□□ -0.98
NUP88-201ENST00000225696 IGHV3-53P01767 116 aa8.92□□□□□ -0.98
NUP88-201ENST00000225696 LINC00242Q5T6M2 205 aa8.92□□□□□ -0.98
NUP88-201ENST00000225696 LINC00308Q8TCZ7 52 aa8.92□□□□□ -0.98
NUP88-201ENST00000225696 UBE2E2Q96LR5 201 aa8.92□□□□□ -0.98
NUP88-201ENST00000225696 ZFYVE26Q68DK2 2539 aa8.91□□□□□ -0.98
NUP88-201ENST00000225696 IGLV5-45A0A087WSX0 123 aa8.91□□□□□ -0.98
NUP88-201ENST00000225696 GAGE12JA6NER3 117 aa8.91□□□□□ -0.98
NUP88-201ENST00000225696 GAGE7O76087 117 aa8.91□□□□□ -0.98
NUP88-201ENST00000225696 GAGE12FP0CL80 117 aa8.91□□□□□ -0.98
NUP88-201ENST00000225696 GAGE12GP0CL81 117 aa8.91□□□□□ -0.98
NUP88-201ENST00000225696 GAGE12IP0CL82 117 aa8.91□□□□□ -0.98
NUP88-201ENST00000225696 GAGE4Q13068 117 aa8.91□□□□□ -0.98
NUP88-201ENST00000225696 A8MTW9 85 aa8.9□□□□□ -0.98
NUP88-201ENST00000225696 ZNF415Q09FC8 603 aa8.9□□□□□ -0.98
NUP88-201ENST00000225696 Q6Q795 121 aa8.9□□□□□ -0.98
NUP88-201ENST00000225696 ZNF843Q8N446 348 aa8.9□□□□□ -0.98
NUP88-201ENST00000225696 SONP18583 2426 aaKnown RBP8.9□□□□□ -0.98
NUP88-201ENST00000225696 DEFB121Q5J5C9 76 aa8.9□□□□□ -0.98
NUP88-201ENST00000225696 YAE1D1Q9NRH1 226 aa8.9□□□□□ -0.98
NUP88-201ENST00000225696 TIMM17BO60830 172 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 CHCHD5Q9BSY4 110 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 MAP6D1Q9H9H5 199 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 NAV2Q8IVL1 2488 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 TRAV13-1A0A0B4J241 112 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 IGLV5-39A0A0G2JS06 123 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 TIRAPP58753 221 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 DGAT2L7PQ6IED9 249 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 XCL2Q9UBD3 114 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 VPREB3Q9UKI3 123 aa8.89□□□□□ -0.99
NUP88-201ENST00000225696 SMIM1B2RUZ4 78 aa8.88□□□□□ -0.99
NUP88-201ENST00000225696 A0A096LNT2 108 aa8.88□□□□□ -0.99
NUP88-201ENST00000225696 BEAN1Q3B7T3 259 aa8.88□□□□□ -0.99
NUP88-201ENST00000225696 NTM-AS1Q6ZSK4 140 aa8.88□□□□□ -0.99
NUP88-201ENST00000225696 C3orf56Q8N813 242 aa8.88□□□□□ -0.99
NUP88-201ENST00000225696 SMCR5Q8TEV8 140 aa8.88□□□□□ -0.99
NUP88-201ENST00000225696 RS1O15537 224 aa8.87□□□□□ -0.99
NUP88-201ENST00000225696 LINC01356Q8N9X3 169 aa8.87□□□□□ -0.99
NUP88-201ENST00000225696 FAM218AQ96MZ4 157 aa8.87□□□□□ -0.99
NUP88-201ENST00000225696 BBC3Q96PG8 261 aaPredicted RBP8.87□□□□□ -0.99
NUP88-201ENST00000225696 C22orf24Q9Y442 160 aa8.87□□□□□ -0.99
NUP88-201ENST00000225696 PIK3CD-AS1Q5SR53 167 aa8.86□□□□□ -0.99
NUP88-201ENST00000225696 FAM240AA0A1B0GVK7 77 aa8.86□□□□□ -0.99
NUP88-201ENST00000225696 SHISA2Q6UWI4 295 aa8.86□□□□□ -0.99
NUP88-201ENST00000225696 Q96MF0 132 aa8.86□□□□□ -0.99
NUP88-201ENST00000225696 COX7A2LO14548 114 aa8.85□□□□□ -0.99
NUP88-201ENST00000225696 CIRBPQ14011 172 aaKnown RBP8.85□□□□□ -0.99
NUP88-201ENST00000225696 Q6YL49 198 aa8.85□□□□□ -0.99
NUP88-201ENST00000225696 DNAJC30Q96LL9 226 aa8.85□□□□□ -0.99
NUP88-201ENST00000225696 TRGV1A0A0A0MS02 117 aa8.85□□□□□ -0.99
NUP88-201ENST00000225696 HERVK_113P63121 156 aa8.85□□□□□ -0.99
NUP88-201ENST00000225696 KHDC1LQ5JSQ8 128 aa8.85□□□□□ -0.99
NUP88-201ENST00000225696 PRIMA1Q86XR5 153 aa8.85□□□□□ -0.99
NUP88-201ENST00000225696 F5H768 121 aa8.84□□□□□ -0.99
NUP88-201ENST00000225696 C1orf158Q8N1D5 194 aa8.84□□□□□ -0.99
NUP88-201ENST00000225696 INSP01308 110 aa8.83□□□□□ -1
NUP88-201ENST00000225696 DAZ2Q13117 558 aaKnown RBP8.83□□□□□ -1
NUP88-201ENST00000225696 DEFB114Q30KQ6 69 aa8.83□□□□□ -1
NUP88-201ENST00000225696 Q6ZTI0 123 aa8.83□□□□□ -1
NUP88-201ENST00000225696 DAZ4Q86SG3 579 aaKnown RBP8.83□□□□□ -1
NUP88-201ENST00000225696 DAZ3Q9NR90 486 aaKnown RBP8.83□□□□□ -1
NUP88-201ENST00000225696 TRBV7-7A0A0K0K1E9 115 aa8.83□□□□□ -1
NUP88-201ENST00000225696 PRB1P04280 392 aa8.83□□□□□ -1
NUP88-201ENST00000225696 ODF3L2Q3SX64 289 aa8.83□□□□□ -1
NUP88-201ENST00000225696 MEIG1Q5JSS6 88 aa8.83□□□□□ -1
NUP88-201ENST00000225696 MRPL23Q16540 153 aaKnown RBP8.82□□□□□ -1
NUP88-201ENST00000225696 ZNF462Q96JM2 2506 aa8.82□□□□□ -1
NUP88-201ENST00000225696 Q9HAA7 133 aa8.82□□□□□ -1
NUP88-201ENST00000225696 CDC42SE2Q9NRR3 84 aa8.82□□□□□ -1
NUP88-201ENST00000225696 BAALC-AS2P0C853 105 aa8.81□□□□□ -1
NUP88-201ENST00000225696 SMIM20Q8N5G0 67 aa8.81□□□□□ -1
NUP88-201ENST00000225696 DYNLRB2Q8TF09 96 aa8.81□□□□□ -1
NUP88-201ENST00000225696 FAM236AA0A1B0GUQ0 79 aa8.8□□□□□ -1
NUP88-201ENST00000225696 FAM236BA0A1B0GV22 79 aa8.8□□□□□ -1
NUP88-201ENST00000225696 FSHBP01225 129 aa8.8□□□□□ -1
NUP88-201ENST00000225696 C11orf44Q8N8P7 122 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms