RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PFASO15067 1338 aa18.44■□□□□ 0.54
CLN3-249ENST00000636685 NFIAQ12857 509 aa18.43■□□□□ 0.54
CLN3-249ENST00000636685 TWISTNBQ3B726 338 aaPredicted RBP18.43■□□□□ 0.54
CLN3-249ENST00000636685 HMX1Q9NP08 348 aaPredicted RBP18.43■□□□□ 0.54
CLN3-249ENST00000636685 OGDHLQ9ULD0 1010 aa18.43■□□□□ 0.54
CLN3-249ENST00000636685 SLC45A1Q9Y2W3 748 aa18.43■□□□□ 0.54
CLN3-249ENST00000636685 COL2A1P02458 1487 aaPredicted RBP18.43■□□□□ 0.54
CLN3-249ENST00000636685 DOCK2Q92608 1830 aa18.42■□□□□ 0.54
CLN3-249ENST00000636685 AFG3L2Q9Y4W6 797 aa18.42■□□□□ 0.54
CLN3-249ENST00000636685 MAST3O60307 1309 aa18.42■□□□□ 0.54
CLN3-249ENST00000636685 PLXNB2O15031 1838 aa18.42■□□□□ 0.54
CLN3-249ENST00000636685 MYH13Q9UKX3 1938 aa18.41■□□□□ 0.54
CLN3-249ENST00000636685 PHF20L1A8MW92 1017 aa18.41■□□□□ 0.54
CLN3-249ENST00000636685 PTPRAP18433 802 aa18.41■□□□□ 0.54
CLN3-249ENST00000636685 COL9A1P20849 921 aa18.41■□□□□ 0.54
CLN3-249ENST00000636685 CDC42EP5Q6NZY7 148 aa18.41■□□□□ 0.54
CLN3-249ENST00000636685 ZFPM1Q8IX07 1006 aa18.41■□□□□ 0.54
CLN3-249ENST00000636685 SCYL3Q8IZE3 742 aa18.41■□□□□ 0.54
CLN3-249ENST00000636685 PICK1Q9NRD5 415 aa18.41■□□□□ 0.54
CLN3-249ENST00000636685 F6X3S4 739 aa18.4■□□□□ 0.54
CLN3-249ENST00000636685 CAVIN4Q5BKX8 364 aa18.4■□□□□ 0.54
CLN3-249ENST00000636685 BEND3Q5T5X7 828 aa18.4■□□□□ 0.54
CLN3-249ENST00000636685 ZNF697Q5TEC3 545 aa18.4■□□□□ 0.54
CLN3-249ENST00000636685 MAFAQ8NHW3 353 aaPredicted RBP18.4■□□□□ 0.54
CLN3-249ENST00000636685 CDX2Q99626 313 aaPredicted RBP18.4■□□□□ 0.54
CLN3-249ENST00000636685 FAM198AQ9UFP1 575 aa18.4■□□□□ 0.54
CLN3-249ENST00000636685 SUGT1Q9Y2Z0 365 aa18.4■□□□□ 0.54
CLN3-249ENST00000636685 DOCK1Q14185 1865 aa18.39■□□□□ 0.54
CLN3-249ENST00000636685 LRRC26Q2I0M4 334 aa18.39■□□□□ 0.53
CLN3-249ENST00000636685 GJD2Q9UKL4 321 aa18.39■□□□□ 0.53
CLN3-249ENST00000636685 DAGLAQ9Y4D2 1042 aa18.39■□□□□ 0.53
CLN3-249ENST00000636685 MROH5Q6ZUA9 1318 aa18.39■□□□□ 0.53
CLN3-249ENST00000636685 CDH23Q9H251 3354 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 TRIM75PA6NK02 468 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 GRM8O00222 908 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 DIXDC1Q155Q3 683 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 FAM110CQ1W6H9 321 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 TREML2Q5T2D2 321 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.38■□□□□ 0.53
CLN3-249ENST00000636685 RAPGEFL1Q9UHV5 662 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 MUC3AQ02505 3323 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 ATRNL1Q5VV63 1379 aa18.38■□□□□ 0.53
CLN3-249ENST00000636685 SLURP2P0DP57 97 aa18.37■□□□□ 0.53
CLN3-249ENST00000636685 COL6A1P12109 1028 aa18.37■□□□□ 0.53
CLN3-249ENST00000636685 CCDC84Q86UT8 332 aaPredicted RBP18.37■□□□□ 0.53
CLN3-249ENST00000636685 TRIB2Q92519 343 aa18.37■□□□□ 0.53
CLN3-249ENST00000636685 AGTPBP1Q9UPW5 1226 aa18.37■□□□□ 0.53
CLN3-249ENST00000636685 LRRC24Q50LG9 513 aa18.36■□□□□ 0.53
CLN3-249ENST00000636685 METTL24Q5JXM2 366 aa18.36■□□□□ 0.53
CLN3-249ENST00000636685 USP40Q9NVE5 1235 aa18.36■□□□□ 0.53
CLN3-249ENST00000636685 DNAH12Q6ZR08 3092 aa18.35■□□□□ 0.53
CLN3-249ENST00000636685 PRKAR2AP13861 404 aaKnown RBP18.35■□□□□ 0.53
CLN3-249ENST00000636685 CYP2B6P20813 491 aa18.34■□□□□ 0.53
CLN3-249ENST00000636685 MAP3K21Q5TCX8 1036 aa18.34■□□□□ 0.53
CLN3-249ENST00000636685 VGLL2Q8N8G2 317 aa18.34■□□□□ 0.53
CLN3-249ENST00000636685 MYLIPQ8WY64 445 aa18.34■□□□□ 0.53
CLN3-249ENST00000636685 KAZALD1Q96I82 304 aa18.34■□□□□ 0.53
CLN3-249ENST00000636685 SUCLG2Q96I99 432 aa18.34■□□□□ 0.53
CLN3-249ENST00000636685 SEMA6BQ9H3T3 888 aa18.34■□□□□ 0.53
CLN3-249ENST00000636685 C9orf78Q9NZ63 289 aaPredicted RBP18.34■□□□□ 0.53
CLN3-249ENST00000636685 PNMA3Q9UL41 463 aa18.34■□□□□ 0.53
CLN3-249ENST00000636685 LRRFIP2Q9Y608 721 aaKnown RBP18.34■□□□□ 0.53
CLN3-249ENST00000636685 MAST2Q6P0Q8 1798 aa18.33■□□□□ 0.53
CLN3-249ENST00000636685 SH3BP5LQ7L8J4 393 aa18.33■□□□□ 0.52
CLN3-249ENST00000636685 SYMPKQ92797 1274 aaKnown RBP18.33■□□□□ 0.52
CLN3-249ENST00000636685 LBHD1Q9BQE6 289 aaPredicted RBP18.33■□□□□ 0.52
CLN3-249ENST00000636685 LOC285556D6RIA3 1793 aa18.32■□□□□ 0.52
CLN3-249ENST00000636685 PDE8BO95263 885 aa18.32■□□□□ 0.52
CLN3-249ENST00000636685 GCLCP48506 637 aaPredicted RBP18.32■□□□□ 0.52
CLN3-249ENST00000636685 RGS3P49796 1198 aa18.32■□□□□ 0.52
CLN3-249ENST00000636685 SPINK5Q9NQ38 1064 aaPredicted RBP18.32■□□□□ 0.52
CLN3-249ENST00000636685 FRMPD3Q5JV73 1810 aa18.32■□□□□ 0.52
CLN3-249ENST00000636685 MYH2Q9UKX2 1941 aa18.31■□□□□ 0.52
CLN3-249ENST00000636685 LTBP2Q14767 1821 aa18.31■□□□□ 0.52
CLN3-249ENST00000636685 CTNND1O60716 968 aaKnown RBP18.31■□□□□ 0.52
CLN3-249ENST00000636685 PRDX5P30044 214 aa18.31■□□□□ 0.52
CLN3-249ENST00000636685 ZEB1P37275 1124 aaPredicted RBP18.31■□□□□ 0.52
CLN3-249ENST00000636685 LHX8Q68G74 356 aa18.31■□□□□ 0.52
CLN3-249ENST00000636685 ZSCAN29Q8IWY8 852 aaPredicted RBP18.31■□□□□ 0.52
CLN3-249ENST00000636685 WDR66Q8TBY9 1149 aa18.31■□□□□ 0.52
CLN3-249ENST00000636685 CCND3P30281 292 aaPredicted RBP18.3■□□□□ 0.52
CLN3-249ENST00000636685 MAP3K10Q02779 954 aa18.3■□□□□ 0.52
CLN3-249ENST00000636685 DDTLA6NHG4 134 aaPredicted RBP18.29■□□□□ 0.52
CLN3-249ENST00000636685 FGFR2P21802 821 aa18.29■□□□□ 0.52
CLN3-249ENST00000636685 CACNB2Q08289 660 aaPredicted RBP18.29■□□□□ 0.52
CLN3-249ENST00000636685 PROCA1Q8NCQ7 364 aaPredicted RBP18.29■□□□□ 0.52
CLN3-249ENST00000636685 TTYH1Q9H313 450 aaPredicted RBP18.29■□□□□ 0.52
CLN3-249ENST00000636685 ATAD5Q96QE3 1844 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 TNFRSF10AO00220 468 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 PEX10O60683 326 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 ENTPD3O75355 529 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 IFIT1P09914 478 aaKnown RBP18.28■□□□□ 0.52
CLN3-249ENST00000636685 FOSL2P15408 326 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 SPP2Q13103 211 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 SHHQ15465 462 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 KLHDC4Q8TBB5 520 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 IDI2Q9BXS1 227 aa18.28■□□□□ 0.52
CLN3-249ENST00000636685 ASCC2Q9H1I8 757 aaPredicted RBP18.28■□□□□ 0.52
CLN3-249ENST00000636685 KIF16BQ96L93 1317 aa18.27■□□□□ 0.52
CLN3-249ENST00000636685 VAMP4O75379 141 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms