RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	JCAD	Q9P266	1359 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	IRF6	O14896	467 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	ELF1	P32519	619 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	KRT32	Q14532	448 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	MSANTD4	Q8NCY6	345 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	CNNM3	Q8NE01	707 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	FAM212A	Q96EL1	285 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	MCM8	Q9UJA3	840 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	ZNF831	Q5JPB2	1677 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	ABCC12	Q96J65	1359 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	ANKRD33B	A6NCL7	494 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	EYA2	O00167	538 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	NMI	Q13287	307 aa	Predicted RBP	12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	GNL2	Q13823	731 aa	Known RBP	12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	ANKRD1	Q15327	319 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	CCDC57	Q2TAC2	916 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	LARP1B	Q659C4	914 aa	Known RBP	12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	KCNV1	Q6PIU1	500 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	GIGYF2	Q6Y7W6	1299 aa	Known RBP	12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	DNAJC10	Q8IXB1	793 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	BICD2	Q8TD16	824 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	KAT2B	Q92831	832 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	ERCC4	Q92889	916 aa	Predicted RBP	12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	HAUS7	Q99871	368 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	PLCD4	Q9BRC7	762 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	BOLA2	Q9H3K6	86 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	VEZT	Q9HBM0	779 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	TLR7	Q9NYK1	1049 aa	Known RBP	12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	DBNL	Q9UJU6	430 aa	Known RBP	12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	CYP46A1	Q9Y6A2	500 aa		12.3	□□□□□ -0.44
CHD2-223	ENST00000636306	NR1I2	O75469	434 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	GCFC2	P16383	781 aa	Known RBP	12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	GPT	P24298	496 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	CRYM	Q14894	314 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	TMED8	Q6PL24	325 aa	Predicted RBP	12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	CCDC83	Q8IWF9	413 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	TEX11	Q8IYF3	940 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	PRPF38A	Q8NAV1	312 aa	Known RBP	12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	CTCFL	Q8NI51	663 aa	Predicted RBP	12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	KLHDC4	Q8TBB5	520 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	FAXDC2	Q96IV6	333 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	ASAP1	Q9ULH1	1129 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	L1RE1	Q9UN81	338 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	NUP98	P52948	1817 aa		12.29	□□□□□ -0.44
CHD2-223	ENST00000636306	ERVV-1	B6SEH8	477 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	PREPL	Q4J6C6	727 aa	Predicted RBP	12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	TMC6	Q7Z403	805 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	CABS1	Q96KC9	395 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	FAM210A	Q96ND0	272 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	VIPAS39	Q9H9C1	493 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	ZNF330	Q9Y3S2	320 aa	Predicted RBP	12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	SPATA31A1	Q5TZJ5	1347 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	LAMB2	P55268	1798 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	TTC36	A6NLP5	189 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	CHUK	O15111	745 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	RDX	P35241	583 aa	Known RBP	12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	IL6ST	P40189	918 aa	Predicted RBP	12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	SF3B2	Q13435	895 aa	Known RBP	12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	BIRC2	Q13490	618 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	DDB1	Q16531	1140 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	AFAP1L1	Q8TED9	768 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	MAP4K1	Q92918	833 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	PGBD1	Q96JS3	809 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	IL25	Q9H293	177 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	CEP126	Q9P2H0	1117 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	SH3BP1	Q9Y3L3	701 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	RBM8A	Q9Y5S9	174 aa	Known RBP	12.28	□□□□□ -0.44
CHD2-223	ENST00000636306		U3KPZ7	1027 aa	Predicted RBP	12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	SH3TC1	Q8TE82	1336 aa		12.28	□□□□□ -0.44
CHD2-223	ENST00000636306	SHOX2	O60902	331 aa	Predicted RBP	12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	CYP19A1	P11511	503 aa	Predicted RBP	12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	SCP2	P22307	547 aa		12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	MRPL12	P52815	198 aa	Known RBP	12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	PRPF40B	Q6NWY9	871 aa	Known RBP	12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	NBPF5P	Q86XG9	351 aa	Predicted RBP	12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	CEP112	Q8N8E3	955 aa		12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	ITFG2	Q969R8	447 aa		12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	JAKMIP1	Q96N16	626 aa	Known RBP	12.27	□□□□□ -0.45
CHD2-223	ENST00000636306	LRP5	O75197	1615 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	EBAG9	O00559	213 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	TOM1	O60784	492 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	INPP5B	P32019	993 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	AARS	P49588	968 aa	Known RBP eCLIP	12.26	□□□□□ -0.45	4e-8	■□□□□ 11.2
CHD2-223	ENST00000636306	IFIT5	Q13325	482 aa	Known RBP	12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	NECTIN1	Q15223	517 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	CREB3L3	Q68CJ9	461 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	ATG9A	Q7Z3C6	839 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	SRGAP1	Q7Z6B7	1085 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	SPATS2	Q86XZ4	545 aa	Known RBP	12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	AMOTL1	Q8IY63	956 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	KBTBD3	Q8NAB2	608 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	DBNDD2	Q9BQY9	259 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	ZSWIM6	Q9HCJ5	1215 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	ARAP2	Q8WZ64	1704 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306	SLIT2	O94813	1529 aa		12.26	□□□□□ -0.45
CHD2-223	ENST00000636306		A0A0D9SFI3	127 aa		12.25	□□□□□ -0.45
CHD2-223	ENST00000636306	LARGE1	O95461	756 aa		12.25	□□□□□ -0.45
CHD2-223	ENST00000636306	NF2	P35240	595 aa		12.25	□□□□□ -0.45

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