RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 DDRGK1Q96HY6 314 aa24.53■■□□□ 1.52
CLN3-245ENST00000636172 IDI2Q9BXS1 227 aa24.53■■□□□ 1.52
CLN3-245ENST00000636172 ZNF70Q9UC06 446 aaPredicted RBP24.53■■□□□ 1.52
CLN3-245ENST00000636172 MYH1P12882 1939 aa24.53■■□□□ 1.52
CLN3-245ENST00000636172 CLRN2A0PK11 232 aa24.52■■□□□ 1.52
CLN3-245ENST00000636172 CYP21A2P08686 494 aa24.52■■□□□ 1.52
CLN3-245ENST00000636172 PICALMQ13492 652 aa24.52■■□□□ 1.52
CLN3-245ENST00000636172 RASEFQ8IZ41 740 aa24.52■■□□□ 1.52
CLN3-245ENST00000636172 TAF6LQ9Y6J9 622 aa24.52■■□□□ 1.52
CLN3-245ENST00000636172 WDR90Q96KV7 1748 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 CTR9Q6PD62 1173 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 TSHZ2Q9NRE2 1034 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 MCM9Q9NXL9 1143 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 FAM198AQ9UFP1 575 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 USP17L12C9JPN9 530 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 USP17L21D6R901 530 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 MYO1BO43795 1136 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 HAND2P61296 217 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 IMMTQ16891 758 aaKnown RBP24.51■■□□□ 1.51
CLN3-245ENST00000636172 RNF20Q5VTR2 975 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 TMOD2Q9NZR1 351 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 SNX14Q9Y5W7 946 aa24.51■■□□□ 1.51
CLN3-245ENST00000636172 SCN4AP35499 1836 aa24.5■■□□□ 1.51
CLN3-245ENST00000636172 CYP2D7A0A087X1C5 515 aa24.5■■□□□ 1.51
CLN3-245ENST00000636172 NPM3O75607 178 aaKnown RBP24.5■■□□□ 1.51
CLN3-245ENST00000636172 NBPF3Q9H094 633 aa24.5■■□□□ 1.51
CLN3-245ENST00000636172 ADARB2Q9NS39 739 aaKnown RBP24.5■■□□□ 1.51
CLN3-245ENST00000636172 ARPP21Q9UBL0 812 aaPredicted RBP24.5■■□□□ 1.51
CLN3-245ENST00000636172 SAP30BPQ9UHR5 308 aaKnown RBP24.5■■□□□ 1.51
CLN3-245ENST00000636172 ASTN2O75129 1339 aaPredicted RBP24.49■■□□□ 1.51
CLN3-245ENST00000636172 ZNF213O14771 459 aa24.49■■□□□ 1.51
CLN3-245ENST00000636172 CYP2D6P10635 497 aa24.49■■□□□ 1.51
CLN3-245ENST00000636172 ANAPC15P60006 121 aa24.49■■□□□ 1.51
CLN3-245ENST00000636172 SBK1Q52WX2 424 aa24.49■■□□□ 1.51
CLN3-245ENST00000636172 KIF2CQ99661 725 aa24.49■■□□□ 1.51
CLN3-245ENST00000636172 OSBPL5Q9H0X9 879 aaPredicted RBP24.49■■□□□ 1.51
CLN3-245ENST00000636172 HACL1Q9UJ83 578 aa24.49■■□□□ 1.51
CLN3-245ENST00000636172 SMIM22K7EJ46 135 aa24.48■■□□□ 1.51
CLN3-245ENST00000636172 HIRAP54198 1017 aaPredicted RBP24.48■■□□□ 1.51
CLN3-245ENST00000636172 EVX2Q03828 476 aa24.48■■□□□ 1.51
CLN3-245ENST00000636172 FKBP1CQ5VVH2 108 aa24.48■■□□□ 1.51
CLN3-245ENST00000636172 ZFPM1Q8IX07 1006 aa24.48■■□□□ 1.51
CLN3-245ENST00000636172 IL17RAQ96F46 866 aa24.48■■□□□ 1.51
CLN3-245ENST00000636172 VEZTQ9HBM0 779 aa24.48■■□□□ 1.51
CLN3-245ENST00000636172 MINDY4BA8MYZ0 360 aa24.47■■□□□ 1.51
CLN3-245ENST00000636172 TCP10L2B9ZVM9 353 aa24.47■■□□□ 1.51
CLN3-245ENST00000636172 ZKSCAN1P17029 563 aaPredicted RBP24.47■■□□□ 1.51
CLN3-245ENST00000636172 PPARAQ07869 468 aa24.47■■□□□ 1.51
CLN3-245ENST00000636172 TCP10Q12799 353 aa24.47■■□□□ 1.51
CLN3-245ENST00000636172 SLC4A8Q2Y0W8 1093 aa24.47■■□□□ 1.51
CLN3-245ENST00000636172 TSGA10IPQ3SY00 556 aa24.47■■□□□ 1.51
CLN3-245ENST00000636172 ANAPC4Q9UJX5 808 aa24.47■■□□□ 1.51
CLN3-245ENST00000636172 CNTNAP1P78357 1384 aa24.47■■□□□ 1.51
CLN3-245ENST00000636172 POTECB2RU33 542 aa24.46■■□□□ 1.51
CLN3-245ENST00000636172 ENTPD3O75355 529 aa24.46■■□□□ 1.51
CLN3-245ENST00000636172 C12orf60Q5U649 245 aa24.46■■□□□ 1.51
CLN3-245ENST00000636172 TBC1D10CQ8IV04 446 aa24.46■■□□□ 1.51
CLN3-245ENST00000636172 POLR3DP05423 398 aaPredicted RBP24.45■■□□□ 1.51
CLN3-245ENST00000636172 CTDSPL2Q05D32 466 aa24.45■■□□□ 1.51
CLN3-245ENST00000636172 STOX1Q6ZVD7 989 aa24.45■■□□□ 1.51
CLN3-245ENST00000636172 COL2A1P02458 1487 aaPredicted RBP24.45■■□□□ 1.5
CLN3-245ENST00000636172 EPHX2P34913 555 aa24.45■■□□□ 1.5
CLN3-245ENST00000636172 PLCD1P51178 756 aa24.45■■□□□ 1.5
CLN3-245ENST00000636172 ADCK5Q3MIX3 580 aa24.45■■□□□ 1.5
CLN3-245ENST00000636172 AMOTL1Q8IY63 956 aa24.45■■□□□ 1.5
CLN3-245ENST00000636172 SIPA1L1O43166 1804 aa24.44■■□□□ 1.5
CLN3-245ENST00000636172 IQCA1LA6NCM1 817 aa24.44■■□□□ 1.5
CLN3-245ENST00000636172 E7EWF7 191 aa24.44■■□□□ 1.5
CLN3-245ENST00000636172 SH3BP5LQ7L8J4 393 aa24.44■■□□□ 1.5
CLN3-245ENST00000636172 TACC3Q9Y6A5 838 aa24.44■■□□□ 1.5
CLN3-245ENST00000636172 ATRNL1Q5VV63 1379 aa24.44■■□□□ 1.5
CLN3-245ENST00000636172 ROBO3Q96MS0 1386 aa24.44■■□□□ 1.5
CLN3-245ENST00000636172 ANGEL2Q5VTE6 544 aaKnown RBP24.43■■□□□ 1.5
CLN3-245ENST00000636172 FAM83AQ86UY5 434 aa24.43■■□□□ 1.5
CLN3-245ENST00000636172 FAM151AQ8WW52 585 aa24.43■■□□□ 1.5
CLN3-245ENST00000636172 TAF1DQ9H5J8 278 aaPredicted RBP24.43■■□□□ 1.5
CLN3-245ENST00000636172 DDTLA6NHG4 134 aaPredicted RBP24.42■■□□□ 1.5
CLN3-245ENST00000636172 KRT32Q14532 448 aa24.42■■□□□ 1.5
CLN3-245ENST00000636172 USP50Q70EL3 339 aaPredicted RBP24.42■■□□□ 1.5
CLN3-245ENST00000636172 GGA3Q9NZ52 723 aa24.42■■□□□ 1.5
CLN3-245ENST00000636172 SCAF8Q9UPN6 1271 aaKnown RBP24.42■■□□□ 1.5
CLN3-245ENST00000636172 AKNAD1Q5T1N1 836 aa24.41■■□□□ 1.5
CLN3-245ENST00000636172 STK11IPQ8N1F8 1099 aa24.41■■□□□ 1.5
CLN3-245ENST00000636172 STAG1Q8WVM7 1258 aa24.41■■□□□ 1.5
CLN3-245ENST00000636172 JAKMIP1Q96N16 626 aaKnown RBP24.41■■□□□ 1.5
CLN3-245ENST00000636172 DHX36Q9H2U1 1008 aaKnown RBP24.41■■□□□ 1.5
CLN3-245ENST00000636172 INCENPQ9NQS7 918 aa24.41■■□□□ 1.5
CLN3-245ENST00000636172 TNFAIP1Q13829 316 aa24.4■■□□□ 1.5
CLN3-245ENST00000636172 COL9A3Q14050 684 aaPredicted RBP24.4■■□□□ 1.5
CLN3-245ENST00000636172 TTC6Q86TZ1 520 aa24.4■■□□□ 1.5
CLN3-245ENST00000636172 TMEM39BQ9GZU3 492 aa24.4■■□□□ 1.5
CLN3-245ENST00000636172 NEDD4P46934 1319 aa24.4■■□□□ 1.5
CLN3-245ENST00000636172 TNNI2P48788 182 aa24.4■■□□□ 1.5
CLN3-245ENST00000636172 RASA3Q14644 834 aa24.4■■□□□ 1.5
CLN3-245ENST00000636172 APOBEC3FQ8IUX4 373 aaKnown RBP24.4■■□□□ 1.5
CLN3-245ENST00000636172 ZSCAN29Q8IWY8 852 aaPredicted RBP24.4■■□□□ 1.5
CLN3-245ENST00000636172 DYNLL2Q96FJ2 89 aa24.4■■□□□ 1.5
CLN3-245ENST00000636172 POLR2AP24928 1970 aaKnown RBP24.39■■□□□ 1.5
CLN3-245ENST00000636172 HLA-DOAP06340 250 aa24.39■■□□□ 1.49
CLN3-245ENST00000636172 SLC3A2P08195 630 aaKnown RBP24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms