RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 WDHD1O75717 1129 aaPredicted RBP22.05■■□□□ 1.12
CLN3-243ENST00000635973 TCP10Q12799 353 aa22.05■■□□□ 1.12
CLN3-243ENST00000635973 B4GALNT3Q6L9W6 998 aa22.05■■□□□ 1.12
CLN3-243ENST00000635973 ERICH6Q7L0X2 663 aa22.05■■□□□ 1.12
CLN3-243ENST00000635973 FAM151AQ8WW52 585 aa22.05■■□□□ 1.12
CLN3-243ENST00000635973 ZNF341Q9BYN7 854 aa22.05■■□□□ 1.12
CLN3-243ENST00000635973 USP40Q9NVE5 1235 aa22.05■■□□□ 1.12
CLN3-243ENST00000635973 RPAP1Q9BWH6 1393 aaPredicted RBP22.04■■□□□ 1.12
CLN3-243ENST00000635973 CCL15-CCL14A0A0B4J2E2 113 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 TESPA1A2RU30 521 aaPredicted RBP22.04■■□□□ 1.12
CLN3-243ENST00000635973 ZAP70P43403 619 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 CRHR2Q13324 411 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 CCL15Q16663 113 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 CDC42EP5Q6NZY7 148 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 TBC1D9Q6ZT07 1266 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 SLF2Q8IX21 1173 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 CNKSR2Q8WXI2 1034 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 ERO1AQ96HE7 468 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 RAI14Q9P0K7 980 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 LRP2BPQ9P2M1 347 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 TRIM17Q9Y577 477 aa22.04■■□□□ 1.12
CLN3-243ENST00000635973 MIGA2Q7L4E1 593 aa22.03■■□□□ 1.12
CLN3-243ENST00000635973 ERO1BQ86YB8 467 aa22.03■■□□□ 1.12
CLN3-243ENST00000635973 SMC5Q8IY18 1101 aa22.03■■□□□ 1.12
CLN3-243ENST00000635973 DNAJC2Q99543 621 aaKnown RBP22.03■■□□□ 1.12
CLN3-243ENST00000635973 PTPN18Q99952 460 aa22.03■■□□□ 1.12
CLN3-243ENST00000635973 SPDYE5A6NIY4 337 aa22.02■■□□□ 1.12
CLN3-243ENST00000635973 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.02■■□□□ 1.12
CLN3-243ENST00000635973 ZKSCAN4Q969J2 545 aaPredicted RBP22.02■■□□□ 1.12
CLN3-243ENST00000635973 MS4A4AQ96JQ5 239 aa22.02■■□□□ 1.12
CLN3-243ENST00000635973 ECHDC1Q9NTX5 307 aa22.02■■□□□ 1.12
CLN3-243ENST00000635973 NDUFB9Q9Y6M9 179 aa22.02■■□□□ 1.12
CLN3-243ENST00000635973 CYP2E1P05181 493 aaPredicted RBP22.01■■□□□ 1.11
CLN3-243ENST00000635973 TAF1CQ15572 869 aaPredicted RBP22.01■■□□□ 1.11
CLN3-243ENST00000635973 BOLA2Q9H3K6 86 aa22.01■■□□□ 1.11
CLN3-243ENST00000635973 ZFYVE28Q9HCC9 887 aa22.01■■□□□ 1.11
CLN3-243ENST00000635973 SNCAIPQ9Y6H5 919 aa22.01■■□□□ 1.11
CLN3-243ENST00000635973 TNRC18O15417 2968 aaPredicted RBP22■■□□□ 1.11
CLN3-243ENST00000635973 CETPP11597 493 aa22■■□□□ 1.11
CLN3-243ENST00000635973 ATP5JP18859 108 aa22■■□□□ 1.11
CLN3-243ENST00000635973 SP3Q02447 781 aa22■■□□□ 1.11
CLN3-243ENST00000635973 BRI3BPQ8WY22 251 aa22■■□□□ 1.11
CLN3-243ENST00000635973 LNPKQ9C0E8 428 aa22■■□□□ 1.11
CLN3-243ENST00000635973 GSTO1P78417 241 aa21.99■■□□□ 1.11
CLN3-243ENST00000635973 MECOMQ03112 1051 aa21.99■■□□□ 1.11
CLN3-243ENST00000635973 NFIAQ12857 509 aa21.99■■□□□ 1.11
CLN3-243ENST00000635973 SNAPC2Q13487 334 aa21.99■■□□□ 1.11
CLN3-243ENST00000635973 ARHGEF6Q15052 776 aa21.99■■□□□ 1.11
CLN3-243ENST00000635973 TSHZ3Q63HK5 1081 aa21.99■■□□□ 1.11
CLN3-243ENST00000635973 CD99L2Q8TCZ2 262 aa21.99■■□□□ 1.11
CLN3-243ENST00000635973 GOLIM4O00461 696 aa21.98■■□□□ 1.11
CLN3-243ENST00000635973 IDH1O75874 414 aaKnown RBP21.98■■□□□ 1.11
CLN3-243ENST00000635973 PPIL2Q13356 520 aa21.98■■□□□ 1.11
CLN3-243ENST00000635973 TTF1Q15361 905 aaPredicted RBP21.98■■□□□ 1.11
CLN3-243ENST00000635973 OTOP1Q7RTM1 612 aa21.98■■□□□ 1.11
CLN3-243ENST00000635973 CHD1LQ86WJ1 897 aa21.98■■□□□ 1.11
CLN3-243ENST00000635973 ZSCAN29Q8IWY8 852 aaPredicted RBP21.98■■□□□ 1.11
CLN3-243ENST00000635973 OTUD7AQ8TE49 926 aaPredicted RBP21.98■■□□□ 1.11
CLN3-243ENST00000635973 PIH1D3Q9NQM4 214 aaKnown RBP21.98■■□□□ 1.11
CLN3-243ENST00000635973 DOCK2Q92608 1830 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 IRF6O14896 467 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 ERC2O15083 957 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 MX1P20591 662 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 NUCB1Q02818 461 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 PPATQ06203 517 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 HAUS7Q99871 368 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 EFCC1Q9HA90 598 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 TTC41PQ6P2S7 1318 aa21.97■■□□□ 1.11
CLN3-243ENST00000635973 LDHCP07864 332 aa21.96■■□□□ 1.11
CLN3-243ENST00000635973 INPP5BP32019 993 aa21.96■■□□□ 1.11
CLN3-243ENST00000635973 MAP3K12Q12852 859 aa21.96■■□□□ 1.11
CLN3-243ENST00000635973 NAA16Q6N069 864 aaPredicted RBP21.96■■□□□ 1.11
CLN3-243ENST00000635973 FAM43AQ8N2R8 423 aa21.96■■□□□ 1.11
CLN3-243ENST00000635973 NSUN4Q96CB9 384 aaKnown RBP21.96■■□□□ 1.11
CLN3-243ENST00000635973 ANTXR1Q9H6X2 564 aa21.96■■□□□ 1.11
CLN3-243ENST00000635973 PAG1Q9NWQ8 432 aa21.96■■□□□ 1.11
CLN3-243ENST00000635973 FAM198AQ9UFP1 575 aa21.96■■□□□ 1.11
CLN3-243ENST00000635973 MAST2Q6P0Q8 1798 aa21.96■■□□□ 1.11
CLN3-243ENST00000635973 ENTPD3O75355 529 aa21.95■■□□□ 1.1
CLN3-243ENST00000635973 RGS3P49796 1198 aa21.95■■□□□ 1.1
CLN3-243ENST00000635973 NOL10Q9BSC4 688 aaKnown RBP21.95■■□□□ 1.1
CLN3-243ENST00000635973 ZCCHC17Q9NP64 241 aaKnown RBP21.95■■□□□ 1.1
CLN3-243ENST00000635973 MROH7-TTC4A0A0A0MT08 1334 aa21.95■■□□□ 1.1
CLN3-243ENST00000635973 GAKO14976 1311 aa21.95■■□□□ 1.1
CLN3-243ENST00000635973 IGSF3O75054 1194 aa21.94■■□□□ 1.1
CLN3-243ENST00000635973 BTDP43251 543 aa21.94■■□□□ 1.1
CLN3-243ENST00000635973 EDC3Q96F86 508 aaKnown RBP21.94■■□□□ 1.1
CLN3-243ENST00000635973 IDI2Q9BXS1 227 aa21.94■■□□□ 1.1
CLN3-243ENST00000635973 PTPN22Q9Y2R2 807 aa21.94■■□□□ 1.1
CLN3-243ENST00000635973 GLRX3O76003 335 aaKnown RBP21.93■■□□□ 1.1
CLN3-243ENST00000635973 PICALMQ13492 652 aa21.93■■□□□ 1.1
CLN3-243ENST00000635973 KIF22Q14807 665 aa21.93■■□□□ 1.1
CLN3-243ENST00000635973 MAGEB6Q8N7X4 407 aa21.93■■□□□ 1.1
CLN3-243ENST00000635973 FAM163AQ96GL9 167 aaPredicted RBP21.93■■□□□ 1.1
CLN3-243ENST00000635973 ZNF112Q9UJU3 913 aa21.93■■□□□ 1.1
CLN3-243ENST00000635973 BTBD19C9JJ37 291 aa21.92■■□□□ 1.1
CLN3-243ENST00000635973 ZFPM1Q8IX07 1006 aa21.92■■□□□ 1.1
CLN3-243ENST00000635973 CCDC136Q96JN2 1154 aa21.92■■□□□ 1.1
CLN3-243ENST00000635973 PICK1Q9NRD5 415 aa21.92■■□□□ 1.1
CLN3-243ENST00000635973 PDE4DIPQ5VU43 2346 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms