RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 FSD1Q9BTV5 496 aa24.52■■□□□ 1.52
PTCD3-220ENST00000627371 DDX60LQ5H9U9 1706 aaKnown RBP24.52■■□□□ 1.52
PTCD3-220ENST00000627371 HUNKP57058 714 aa24.51■■□□□ 1.51
PTCD3-220ENST00000627371 TTLL12Q14166 644 aaPredicted RBP24.51■■□□□ 1.51
PTCD3-220ENST00000627371 HOOK2Q96ED9 719 aa24.51■■□□□ 1.51
PTCD3-220ENST00000627371 HHIPL1Q96JK4 782 aa24.51■■□□□ 1.51
PTCD3-220ENST00000627371 ATRNL1Q5VV63 1379 aa24.51■■□□□ 1.51
PTCD3-220ENST00000627371 SIPA1L1O43166 1804 aa24.5■■□□□ 1.51
PTCD3-220ENST00000627371 RNF113AO15541 343 aaKnown RBP24.5■■□□□ 1.51
PTCD3-220ENST00000627371 PPP1R12BO60237 982 aaPredicted RBP24.5■■□□□ 1.51
PTCD3-220ENST00000627371 MAP3K11Q16584 847 aa24.5■■□□□ 1.51
PTCD3-220ENST00000627371 MOB2Q70IA6 237 aa24.5■■□□□ 1.51
PTCD3-220ENST00000627371 ARMC9Q7Z3E5 817 aa24.5■■□□□ 1.51
PTCD3-220ENST00000627371 TGFBRAP1Q8WUH2 860 aa24.5■■□□□ 1.51
PTCD3-220ENST00000627371 OSBPL5Q9H0X9 879 aaPredicted RBP24.5■■□□□ 1.51
PTCD3-220ENST00000627371 FLT1P17948 1338 aa24.5■■□□□ 1.51
PTCD3-220ENST00000627371 PRKG1Q13976 671 aa24.49■■□□□ 1.51
PTCD3-220ENST00000627371 SH3BP5LQ7L8J4 393 aa24.49■■□□□ 1.51
PTCD3-220ENST00000627371 APPBP2Q92624 585 aa24.49■■□□□ 1.51
PTCD3-220ENST00000627371 ANGEL1Q9UNK9 670 aaKnown RBP24.49■■□□□ 1.51
PTCD3-220ENST00000627371 TRIM6-TRIM34B2RNG4 842 aa24.48■■□□□ 1.51
PTCD3-220ENST00000627371 DEFB115Q30KQ5 88 aa24.48■■□□□ 1.51
PTCD3-220ENST00000627371 MAPKAPK5Q8IW41 473 aa24.48■■□□□ 1.51
PTCD3-220ENST00000627371 ZSCAN29Q8IWY8 852 aaPredicted RBP24.48■■□□□ 1.51
PTCD3-220ENST00000627371 LCORLQ8N3X6 602 aa24.48■■□□□ 1.51
PTCD3-220ENST00000627371 PPP4R2Q9NY27 417 aa24.48■■□□□ 1.51
PTCD3-220ENST00000627371 MKRN1Q9UHC7 482 aaKnown RBP24.48■■□□□ 1.51
PTCD3-220ENST00000627371 BAZ2AQ9UIF9 1905 aaKnown RBP24.48■■□□□ 1.51
PTCD3-220ENST00000627371 FZD1Q9UP38 647 aa24.48■■□□□ 1.51
PTCD3-220ENST00000627371 DDTLA6NHG4 134 aaPredicted RBP24.47■■□□□ 1.51
PTCD3-220ENST00000627371 MBD4O95243 580 aa24.47■■□□□ 1.51
PTCD3-220ENST00000627371 DCAF15Q66K64 600 aa24.47■■□□□ 1.51
PTCD3-220ENST00000627371 TICAM2Q86XR7 235 aa24.47■■□□□ 1.51
PTCD3-220ENST00000627371 DNAJC5GQ8N7S2 189 aa24.47■■□□□ 1.51
PTCD3-220ENST00000627371 CSRNP1Q96S65 589 aa24.47■■□□□ 1.51
PTCD3-220ENST00000627371 CRNKL1Q9BZJ0 848 aaKnown RBP24.47■■□□□ 1.51
PTCD3-220ENST00000627371 PUS7LQ9H0K6 701 aaKnown RBP24.47■■□□□ 1.51
PTCD3-220ENST00000627371 ARMT1Q9H993 441 aa24.47■■□□□ 1.51
PTCD3-220ENST00000627371 UBE2Q2LH0YL09 131 aa24.46■■□□□ 1.51
PTCD3-220ENST00000627371 USP2O75604 605 aaPredicted RBP24.46■■□□□ 1.51
PTCD3-220ENST00000627371 USP5P45974 858 aa24.46■■□□□ 1.51
PTCD3-220ENST00000627371 IREB2P48200 963 aaKnown RBP24.46■■□□□ 1.51
PTCD3-220ENST00000627371 AIDAQ96BJ3 306 aa24.46■■□□□ 1.51
PTCD3-220ENST00000627371 LDLRAD1Q5T700 205 aa24.45■■□□□ 1.5
PTCD3-220ENST00000627371 TTC22Q5TAA0 569 aa24.45■■□□□ 1.5
PTCD3-220ENST00000627371 OSBP2Q969R2 916 aa24.45■■□□□ 1.5
PTCD3-220ENST00000627371 RILPL2Q969X0 211 aa24.45■■□□□ 1.5
PTCD3-220ENST00000627371 KLRG1Q96E93 195 aa24.45■■□□□ 1.5
PTCD3-220ENST00000627371 THSD7BQ9C0I4 1608 aa24.45■■□□□ 1.5
PTCD3-220ENST00000627371 RGMBQ6NW40 437 aa24.44■■□□□ 1.5
PTCD3-220ENST00000627371 DHX36Q9H2U1 1008 aaKnown RBP24.44■■□□□ 1.5
PTCD3-220ENST00000627371 UNCXA6NJT0 531 aa24.43■■□□□ 1.5
PTCD3-220ENST00000627371 GSPT1P15170 499 aaKnown RBP24.43■■□□□ 1.5
PTCD3-220ENST00000627371 ZMYM1Q5SVZ6 1142 aa24.43■■□□□ 1.5
PTCD3-220ENST00000627371 PAXIP1Q6ZW49 1069 aaPredicted RBP24.43■■□□□ 1.5
PTCD3-220ENST00000627371 MIGA2Q7L4E1 593 aa24.43■■□□□ 1.5
PTCD3-220ENST00000627371 ZNF341Q9BYN7 854 aa24.43■■□□□ 1.5
PTCD3-220ENST00000627371 LAMB1P07942 1786 aa24.42■■□□□ 1.5
PTCD3-220ENST00000627371 ECE1P42892 770 aa24.42■■□□□ 1.5
PTCD3-220ENST00000627371 CYP4F22Q6NT55 531 aa24.42■■□□□ 1.5
PTCD3-220ENST00000627371 ANKRD13AQ8IZ07 590 aa24.42■■□□□ 1.5
PTCD3-220ENST00000627371 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.42■■□□□ 1.5
PTCD3-220ENST00000627371 SDR42E1Q8WUS8 393 aa24.42■■□□□ 1.5
PTCD3-220ENST00000627371 DOCK1Q14185 1865 aa24.41■■□□□ 1.5
PTCD3-220ENST00000627371 ATAD5Q96QE3 1844 aa24.41■■□□□ 1.5
PTCD3-220ENST00000627371 M0R2C6 588 aa24.41■■□□□ 1.5
PTCD3-220ENST00000627371 VEGFBP49765 207 aa24.41■■□□□ 1.5
PTCD3-220ENST00000627371 ZNF157P51786 506 aaPredicted RBP24.41■■□□□ 1.5
PTCD3-220ENST00000627371 MAP3K10Q02779 954 aa24.41■■□□□ 1.5
PTCD3-220ENST00000627371 CAPNS2Q96L46 248 aa24.41■■□□□ 1.5
PTCD3-220ENST00000627371 STRBPQ96SI9 672 aaKnown RBP24.41■■□□□ 1.5
PTCD3-220ENST00000627371 PI4KBQ9UBF8 816 aa24.41■■□□□ 1.5
PTCD3-220ENST00000627371 SAP30BPQ9UHR5 308 aaKnown RBP24.41■■□□□ 1.5
PTCD3-220ENST00000627371 PALD1Q9ULE6 856 aa24.41■■□□□ 1.5
PTCD3-220ENST00000627371 WDR33Q9C0J8 1336 aaKnown RBP24.4■■□□□ 1.5
PTCD3-220ENST00000627371 GPAA1O43292 621 aa24.4■■□□□ 1.5
PTCD3-220ENST00000627371 PRKAB2O43741 272 aa24.4■■□□□ 1.5
PTCD3-220ENST00000627371 TBC1D12O60347 775 aa24.4■■□□□ 1.5
PTCD3-220ENST00000627371 WRNIP1Q96S55 665 aa24.4■■□□□ 1.5
PTCD3-220ENST00000627371 SEC62Q99442 399 aaKnown RBP24.4■■□□□ 1.5
PTCD3-220ENST00000627371 DCP1AQ9NPI6 582 aaPredicted RBP24.4■■□□□ 1.5
PTCD3-220ENST00000627371 ATP8A2Q9NTI2 1148 aa24.4■■□□□ 1.5
PTCD3-220ENST00000627371 ZNF112Q9UJU3 913 aa24.4■■□□□ 1.5
PTCD3-220ENST00000627371 PCNTO95613 3336 aa24.4■■□□□ 1.5
PTCD3-220ENST00000627371 MYH8P13535 1937 aa24.39■■□□□ 1.5
PTCD3-220ENST00000627371 HLA-DOAP06340 250 aa24.39■■□□□ 1.49
PTCD3-220ENST00000627371 SLC10A3P09131 477 aa24.39■■□□□ 1.49
PTCD3-220ENST00000627371 MAP3K9P80192 1104 aa24.39■■□□□ 1.49
PTCD3-220ENST00000627371 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.39■■□□□ 1.49
PTCD3-220ENST00000627371 RASAL3Q86YV0 1011 aa24.39■■□□□ 1.49
PTCD3-220ENST00000627371 CCDC102AQ96A19 550 aa24.39■■□□□ 1.49
PTCD3-220ENST00000627371 SLC4A4Q9Y6R1 1079 aa24.39■■□□□ 1.49
PTCD3-220ENST00000627371 FAM155AB1AL88 458 aaPredicted RBP24.38■■□□□ 1.49
PTCD3-220ENST00000627371 SDSP20132 328 aa24.38■■□□□ 1.49
PTCD3-220ENST00000627371 SKAP1Q86WV1 359 aa24.38■■□□□ 1.49
PTCD3-220ENST00000627371 CLMNQ96JQ2 1002 aa24.38■■□□□ 1.49
PTCD3-220ENST00000627371 HELLSQ9NRZ9 838 aa24.38■■□□□ 1.49
PTCD3-220ENST00000627371 HERC5Q9UII4 1024 aaKnown RBP24.38■■□□□ 1.49
PTCD3-220ENST00000627371 SLURP2P0DP57 97 aa24.37■■□□□ 1.49
PTCD3-220ENST00000627371 GNAT2P19087 354 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms