RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 CDCA7Q9BWT1 371 aaPredicted RBP16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 CARMIL3Q8ND23 1372 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 DHX16O60231 1041 aaKnown RBP16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 NTSR2O95665 410 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 MB21D2Q8IYB1 491 aaPredicted RBP16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 CLIC6Q96NY7 704 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 PLA2G12BQ9BX93 195 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 MROH5Q6ZUA9 1318 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 ERICH2A1L162 156 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 CCDC66A2RUB6 948 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 GUCY1A2P33402 732 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 TRIM29Q14134 588 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 TRAPPC3LQ5T215 181 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 NOL10Q9BSC4 688 aaKnown RBP16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 UBAC1Q9BSL1 405 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 NACAP1Q9BZK3 213 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 CCDC144BQ3MJ40 725 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 SEPT12Q8IYM1 358 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 HPS5Q9UPZ3 1129 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 GOLGA6L19H0YKK7 550 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 NMT2O60551 498 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 ZNF622Q969S3 477 aaKnown RBP eCLIP16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 CDHR2Q9BYE9 1310 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 CPLX2Q6PUV4 134 aaKnown RBP16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 TPTE2Q6XPS3 522 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 TIGD1Q96MW7 591 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 ZNF396Q96N95 335 aaPredicted RBP16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 PCDHA7Q9UN72 937 aa16.71■□□□□ 0.27
SHROOM1-208ENST00000617339 SPATA31A5Q5VU36 1347 aa16.71■□□□□ 0.26
SHROOM1-208ENST00000617339 SPATA31A7Q8IWB4 1347 aa16.71■□□□□ 0.26
SHROOM1-208ENST00000617339 RIC1Q4ADV7 1423 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 PRDX5P30044 214 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 ZNF75DP51815 510 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 ATP2B2Q01814 1243 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 CREBRFQ8IUR6 639 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 ARFGEF2Q9Y6D5 1785 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 GSG1L2A8MUP6 293 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 RIMBP2O15034 1052 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 AKAP17AQ02040 695 aaKnown RBP16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 NAA16Q6N069 864 aaPredicted RBP16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 TACC3Q9Y6A5 838 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 AFF2P51816 1311 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 SIPA1L3O60292 1781 aaPredicted RBP16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 PATL2C9JE40 543 aaKnown RBP16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 APOA5Q6Q788 366 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 ZNF274Q96GC6 653 aaPredicted RBP16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 ZSCAN16Q9H4T2 348 aaPredicted RBP16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 MINPP1Q9UNW1 487 aa16.7■□□□□ 0.26
SHROOM1-208ENST00000617339 MAGEB6P1A0A0J9YX57 407 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 RPS8P62241 208 aaKnown RBP16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 FBXO38Q6PIJ6 1188 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 ZBTB9Q96C00 473 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 USP17L12C9JPN9 530 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 USP17L21D6R901 530 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 NDUFA8P51970 172 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 PARP10Q53GL7 1025 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 KRT40Q6A162 431 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 ILDR1Q86SU0 546 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 SMARCC2Q8TAQ2 1214 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 CYP2D6P10635 497 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 RBM5P52756 815 aaKnown RBP eCLIP16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 PTPN14Q15678 1187 aa16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 ARHGEF1Q92888 912 aaKnown RBP16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 MORC2Q9Y6X9 1032 aaPredicted RBP16.69■□□□□ 0.26
SHROOM1-208ENST00000617339 BTBD18B2RXH4 712 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 WTAPQ15007 396 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 TNS2Q63HR2 1409 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 C11orf57Q6ZUT1 292 aaPredicted RBP16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 STRCQ7RTU9 1775 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 CERS3Q8IU89 383 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 UBE3CQ15386 1083 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 ZNF397Q8NF99 534 aaPredicted RBP16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 FBXO18Q8NFZ0 1043 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 PAXBP1Q9Y5B6 917 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 DIXDC1Q155Q3 683 aa16.68■□□□□ 0.26
SHROOM1-208ENST00000617339 NR5A1Q13285 461 aa16.67■□□□□ 0.26
SHROOM1-208ENST00000617339 AKNAD1Q5T1N1 836 aa16.67■□□□□ 0.26
SHROOM1-208ENST00000617339 DZIP1Q86YF9 867 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-208ENST00000617339 SPTLC2O15270 562 aa16.67■□□□□ 0.26
SHROOM1-208ENST00000617339 FGFR2P21802 821 aa16.67■□□□□ 0.26
SHROOM1-208ENST00000617339 SAP30BPQ9UHR5 308 aaKnown RBP16.67■□□□□ 0.26
SHROOM1-208ENST00000617339 POLR3GO15318 223 aaPredicted RBP16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 PDIA4P13667 645 aaKnown RBP16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 FAM84BQ96KN1 310 aaPredicted RBP16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 TRIM34Q9BYJ4 488 aa16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 APBA3O96018 575 aa16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 XIRP1Q702N8 1843 aaKnown RBP16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 NFIXQ14938 502 aa16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 LLPHQ9BRT6 129 aaKnown RBP16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 CLSTN2Q9H4D0 955 aa16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 DDX19AQ9NUU7 478 aaKnown RBP16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 FBXO3Q9UK99 471 aa16.66■□□□□ 0.26
SHROOM1-208ENST00000617339 SSRP1Q08945 709 aaKnown RBP16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 SART3Q15020 963 aaKnown RBP16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 MYSM1Q5VVJ2 828 aa16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 CNBD1Q8NA66 436 aa16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 TCRBV5S4A2TA0A5A2 114 aa16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 SKILP12757 684 aa16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 AOPEPQ8N6M6 819 aa16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms