RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RASSF10A6NK89 507 aa16.36■□□□□ 0.21
LINC00540-202ENST00000616974 SDR42E1Q8WUS8 393 aa16.36■□□□□ 0.21
LINC00540-202ENST00000616974 IDI2Q9BXS1 227 aa16.36■□□□□ 0.21
LINC00540-202ENST00000616974 SAP30BPQ9UHR5 308 aaKnown RBP16.36■□□□□ 0.21
LINC00540-202ENST00000616974 GSTO1P78417 241 aa16.35■□□□□ 0.21
LINC00540-202ENST00000616974 TTF1Q15361 905 aaPredicted RBP16.35■□□□□ 0.21
LINC00540-202ENST00000616974 SHROOM1Q2M3G4 852 aaPredicted RBP16.35■□□□□ 0.21
LINC00540-202ENST00000616974 DEFB115Q30KQ5 88 aa16.35■□□□□ 0.21
LINC00540-202ENST00000616974 KBTBD3Q8NAB2 608 aa16.35■□□□□ 0.21
LINC00540-202ENST00000616974 FAM151AQ8WW52 585 aa16.35■□□□□ 0.21
LINC00540-202ENST00000616974 OSBP2Q969R2 916 aa16.35■□□□□ 0.21
LINC00540-202ENST00000616974 KLRG1Q96E93 195 aa16.35■□□□□ 0.21
LINC00540-202ENST00000616974 TMOD2Q9NZR1 351 aa16.35■□□□□ 0.21
LINC00540-202ENST00000616974 FLT1P17948 1338 aa16.35■□□□□ 0.21
LINC00540-202ENST00000616974 GLRX3O76003 335 aaKnown RBP16.34■□□□□ 0.21
LINC00540-202ENST00000616974 TNFAIP1Q13829 316 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 FAM83AQ86UY5 434 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 GPATCH3Q96I76 525 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 PALD1Q9ULE6 856 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 ATAD5Q96QE3 1844 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 MBD4O95243 580 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 LDHCP07864 332 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 GSPT1P15170 499 aaKnown RBP16.34■□□□□ 0.21
LINC00540-202ENST00000616974 PPP4CP60510 307 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 FKBP1CQ5VVH2 108 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 SLF2Q8IX21 1173 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 C2orf69Q8N8R5 385 aa16.34■□□□□ 0.21
LINC00540-202ENST00000616974 ZKSCAN4Q969J2 545 aaPredicted RBP16.34■□□□□ 0.21
LINC00540-202ENST00000616974 ZBTB47Q9UFB7 747 aaPredicted RBP16.34■□□□□ 0.21
LINC00540-202ENST00000616974 FAM155AB1AL88 458 aaPredicted RBP16.33■□□□□ 0.21
LINC00540-202ENST00000616974 M0R2C6 588 aa16.33■□□□□ 0.21
LINC00540-202ENST00000616974 INPP5BP32019 993 aa16.33■□□□□ 0.21
LINC00540-202ENST00000616974 RRP1BQ14684 758 aaKnown RBP16.33■□□□□ 0.21
LINC00540-202ENST00000616974 CCDC129Q6ZRS4 1044 aa16.33■□□□□ 0.21
LINC00540-202ENST00000616974 CAPNS2Q96L46 248 aa16.33■□□□□ 0.21
LINC00540-202ENST00000616974 CSRNP1Q96S65 589 aa16.33■□□□□ 0.21
LINC00540-202ENST00000616974 OSBPL5Q9H0X9 879 aaPredicted RBP16.33■□□□□ 0.21
LINC00540-202ENST00000616974 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.33■□□□□ 0.2
LINC00540-202ENST00000616974 ZSCAN29Q8IWY8 852 aaPredicted RBP16.33■□□□□ 0.2
LINC00540-202ENST00000616974 DNAJC18Q9H819 358 aa16.33■□□□□ 0.2
LINC00540-202ENST00000616974 ERC2O15083 957 aa16.32■□□□□ 0.2
LINC00540-202ENST00000616974 TNNI2P48788 182 aa16.32■□□□□ 0.2
LINC00540-202ENST00000616974 CCDC84Q86UT8 332 aaPredicted RBP16.32■□□□□ 0.2
LINC00540-202ENST00000616974 FSD1Q9BTV5 496 aa16.32■□□□□ 0.2
LINC00540-202ENST00000616974 PPP2R3BQ9Y5P8 575 aa16.32■□□□□ 0.2
LINC00540-202ENST00000616974 PHIPQ8WWQ0 1821 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 CYP2D7A0A087X1C5 515 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 MAGEB6P1A0A0J9YX57 407 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 CYP2D6P10635 497 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 GJA5P36382 358 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 IL25Q9H293 177 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 WDR33Q9C0J8 1336 aaKnown RBP16.31■□□□□ 0.2
LINC00540-202ENST00000616974 MYH8P13535 1937 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 ZNF157P51786 506 aaPredicted RBP16.31■□□□□ 0.2
LINC00540-202ENST00000616974 LDLRAD1Q5T700 205 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 RGMBQ6NW40 437 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 FAM227BQ96M60 508 aa16.31■□□□□ 0.2
LINC00540-202ENST00000616974 RPAP1Q9BWH6 1393 aaPredicted RBP16.31■□□□□ 0.2
LINC00540-202ENST00000616974 ENTPD3O75355 529 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 BAG3O95817 575 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 JAG1P78504 1218 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 RASAL3Q86YV0 1011 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 RILPL2Q969X0 211 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 OSBPL3Q9H4L5 887 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 PTPRFP10586 1907 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 THSD7BQ9C0I4 1608 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 A0A0D9SFI3 127 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 TRIM6-TRIM34B2RNG4 842 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 FOXP2O15409 715 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 RNF113AO15541 343 aaKnown RBP16.3■□□□□ 0.2
LINC00540-202ENST00000616974 NF2P35240 595 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 PLCD1P51178 756 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 VGLL4Q14135 290 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 UBE3CQ15386 1083 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 SUPT20HL1Q3ZLR7 823 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.3■□□□□ 0.2
LINC00540-202ENST00000616974 CCDC136Q96JN2 1154 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 WRNIP1Q96S55 665 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 ELP3Q9H9T3 547 aa16.3■□□□□ 0.2
LINC00540-202ENST00000616974 NEFLP07196 543 aa16.29■□□□□ 0.2
LINC00540-202ENST00000616974 PHF20L1A8MW92 1017 aa16.28■□□□□ 0.2
LINC00540-202ENST00000616974 PPP1R12BO60237 982 aaPredicted RBP16.28■□□□□ 0.2
LINC00540-202ENST00000616974 MAP3K11Q16584 847 aa16.28■□□□□ 0.2
LINC00540-202ENST00000616974 NOL10Q9BSC4 688 aaKnown RBP16.28■□□□□ 0.2
LINC00540-202ENST00000616974 DCP1AQ9NPI6 582 aaPredicted RBP16.28■□□□□ 0.2
LINC00540-202ENST00000616974 DOCK1Q14185 1865 aa16.28■□□□□ 0.2
LINC00540-202ENST00000616974 USP5P45974 858 aa16.28■□□□□ 0.2
LINC00540-202ENST00000616974 VPS53Q5VIR6 699 aa16.28■□□□□ 0.2
LINC00540-202ENST00000616974 ZNF589Q86UQ0 364 aaPredicted RBP16.28■□□□□ 0.2
LINC00540-202ENST00000616974 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.28■□□□□ 0.2
LINC00540-202ENST00000616974 EPB41L4AQ9HCS5 686 aaPredicted RBP16.28■□□□□ 0.2
LINC00540-202ENST00000616974 SNCAIPQ9Y6H5 919 aa16.28■□□□□ 0.2
LINC00540-202ENST00000616974 GPAA1O43292 621 aa16.27■□□□□ 0.2
LINC00540-202ENST00000616974 SLC10A3P09131 477 aa16.27■□□□□ 0.2
LINC00540-202ENST00000616974 ARMC9Q7Z3E5 817 aa16.27■□□□□ 0.2
LINC00540-202ENST00000616974 STRBPQ96SI9 672 aaKnown RBP16.27■□□□□ 0.2
LINC00540-202ENST00000616974 TTC22Q5TAA0 569 aa16.27■□□□□ 0.19
LINC00540-202ENST00000616974 STK11IPQ8N1F8 1099 aa16.27■□□□□ 0.19
LINC00540-202ENST00000616974 SLC44A5Q8NCS7 719 aa16.27■□□□□ 0.19
LINC00540-202ENST00000616974 APPBP2Q92624 585 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms