RNA–Protein interactions for RNA: ENST00000616030.4

LINC00649-217, long intergenic non-protein coding RNA 649, humanhuman

TSL 5 BASIC

Gene LINC00649, Length 714 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00649-217ENST00000616030 USP40Q9NVE5 1235 aa12.74□□□□□ -0.37
LINC00649-217ENST00000616030 TLR7Q9NYK1 1049 aaKnown RBP12.74□□□□□ -0.37
LINC00649-217ENST00000616030 SNCAIPQ9Y6H5 919 aa12.74□□□□□ -0.37
LINC00649-217ENST00000616030 CYP2E1P05181 493 aaPredicted RBP12.73□□□□□ -0.37
LINC00649-217ENST00000616030 BTDP43251 543 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 TTC39AQ5SRH9 613 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 IFNL1Q8IU54 200 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 RHPN1Q8TCX5 695 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 OPTNQ96CV9 577 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 KIF1BPQ96EK5 621 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 ZNF341Q9BYN7 854 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 ZCCHC17Q9NP64 241 aaKnown RBP12.73□□□□□ -0.37
LINC00649-217ENST00000616030 EXOC6BQ9Y2D4 811 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 CSADQ9Y600 493 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 DOCK1Q14185 1865 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 SIPA1L1O43166 1804 aa12.73□□□□□ -0.37
LINC00649-217ENST00000616030 DDX60LQ5H9U9 1706 aaKnown RBP12.73□□□□□ -0.37
LINC00649-217ENST00000616030 PHIPQ8WWQ0 1821 aa12.72□□□□□ -0.37
LINC00649-217ENST00000616030 IGF2BP3O00425 579 aaKnown RBP eCLIP12.72□□□□□ -0.37
LINC00649-217ENST00000616030 RAB11FIP3O75154 756 aa12.72□□□□□ -0.37
LINC00649-217ENST00000616030 LDHCP07864 332 aa12.72□□□□□ -0.37
LINC00649-217ENST00000616030 PPP4CP60510 307 aa12.72□□□□□ -0.37
LINC00649-217ENST00000616030 SH3BP5LQ7L8J4 393 aa12.72□□□□□ -0.37
LINC00649-217ENST00000616030 ERO1BQ86YB8 467 aa12.72□□□□□ -0.37
LINC00649-217ENST00000616030 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.72□□□□□ -0.37
LINC00649-217ENST00000616030 WRNIP1Q96S55 665 aa12.72□□□□□ -0.37
LINC00649-217ENST00000616030 DDX4Q9NQI0 724 aaKnown RBP12.72□□□□□ -0.37
LINC00649-217ENST00000616030 PTPRFP10586 1907 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 AK9Q5TCS8 1911 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 PHF20L1A8MW92 1017 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 TBC1D12O60347 775 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 HOXD11P31277 338 aaPredicted RBP12.71□□□□□ -0.37
LINC00649-217ENST00000616030 ZAP70P43403 619 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 RGS3P49796 1198 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 TBC1D9Q6ZT07 1266 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 CERS3Q8IU89 383 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 GCC1Q96CN9 775 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 ELP3Q9H9T3 547 aa12.71□□□□□ -0.37
LINC00649-217ENST00000616030 GTF2A2P52657 109 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 PPATQ06203 517 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 TCP10Q12799 353 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 PPIL2Q13356 520 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 ZFPM1Q8IX07 1006 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 SMC5Q8IY18 1101 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 CLASRPQ8N2M8 674 aaKnown RBP12.7□□□□□ -0.38
LINC00649-217ENST00000616030 ABHD8Q96I13 439 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 PTPN18Q99952 460 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 CCDC8Q9H0W5 538 aaPredicted RBP12.7□□□□□ -0.38
LINC00649-217ENST00000616030 LRP2BPQ9P2M1 347 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 KCNH4Q9UQ05 1017 aa12.7□□□□□ -0.38
LINC00649-217ENST00000616030 DDTLA6NHG4 134 aaPredicted RBP12.69□□□□□ -0.38
LINC00649-217ENST00000616030 GPR25O00155 361 aa12.69□□□□□ -0.38
LINC00649-217ENST00000616030 PLCG2P16885 1265 aa12.69□□□□□ -0.38
LINC00649-217ENST00000616030 MKRN3Q13064 507 aaKnown RBP12.69□□□□□ -0.38
LINC00649-217ENST00000616030 NAA16Q6N069 864 aaPredicted RBP12.69□□□□□ -0.38
LINC00649-217ENST00000616030 AACSQ86V21 672 aa12.69□□□□□ -0.38
LINC00649-217ENST00000616030 METTL16Q86W50 562 aaKnown RBP12.69□□□□□ -0.38
LINC00649-217ENST00000616030 BRI3BPQ8WY22 251 aa12.69□□□□□ -0.38
LINC00649-217ENST00000616030 OSBPL5Q9H0X9 879 aaPredicted RBP12.69□□□□□ -0.38
LINC00649-217ENST00000616030 DCTPP1Q9H773 170 aa12.69□□□□□ -0.38
LINC00649-217ENST00000616030 PIH1D3Q9NQM4 214 aaKnown RBP12.69□□□□□ -0.38
LINC00649-217ENST00000616030 RAI14Q9P0K7 980 aa12.69□□□□□ -0.38
LINC00649-217ENST00000616030 CENPFP49454 3210 aa12.69□□□□□ -0.38
LINC00649-217ENST00000616030 ATAD5Q96QE3 1844 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 IRF6O14896 467 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 TBC1D8O95759 1140 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 INPP5BP32019 993 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 PKN2Q16513 984 aaKnown RBP12.68□□□□□ -0.38
LINC00649-217ENST00000616030 OTUD7BQ6GQQ9 843 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 CTU1Q7Z7A3 348 aaKnown RBP12.68□□□□□ -0.38
LINC00649-217ENST00000616030 ADGRA1Q86SQ6 560 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 ZNF296Q8WUU4 475 aaPredicted RBP12.68□□□□□ -0.38
LINC00649-217ENST00000616030 ZKSCAN4Q969J2 545 aaPredicted RBP12.68□□□□□ -0.38
LINC00649-217ENST00000616030 OTUD5Q96G74 571 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 MCOLN1Q9GZU1 580 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 SNRKQ9NRH2 765 aa12.68□□□□□ -0.38
LINC00649-217ENST00000616030 LOC285556D6RIA3 1793 aa12.67□□□□□ -0.38
LINC00649-217ENST00000616030 BAG3O95817 575 aa12.67□□□□□ -0.38
LINC00649-217ENST00000616030 SNAPC2Q13487 334 aa12.67□□□□□ -0.38
LINC00649-217ENST00000616030 MIGA2Q7L4E1 593 aa12.67□□□□□ -0.38
LINC00649-217ENST00000616030 SCYL3Q8IZE3 742 aa12.67□□□□□ -0.38
LINC00649-217ENST00000616030 DHX36Q9H2U1 1008 aaKnown RBP12.67□□□□□ -0.38
LINC00649-217ENST00000616030 R3HDMLQ9H3Y0 253 aa12.67□□□□□ -0.38
LINC00649-217ENST00000616030 IL1RAPL2Q9NP60 686 aa12.67□□□□□ -0.38
LINC00649-217ENST00000616030 BRCA2P51587 3418 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 MYH7P12883 1935 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 FLT1P17948 1338 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 CCL15-CCL14A0A0B4J2E2 113 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 CTNND1O60716 968 aaKnown RBP12.66□□□□□ -0.38
LINC00649-217ENST00000616030 FKTNO75072 461 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 CETPP11597 493 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 CRHR2Q13324 411 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 DGKZQ13574 1117 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 MOGSQ13724 837 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 TTF1Q15361 905 aaPredicted RBP12.66□□□□□ -0.38
LINC00649-217ENST00000616030 CCL15Q16663 113 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 TEX11Q8IYF3 940 aa12.66□□□□□ -0.38
LINC00649-217ENST00000616030 SH3RF3Q8TEJ3 882 aaPredicted RBP12.66□□□□□ -0.38
LINC00649-217ENST00000616030 HERC5Q9UII4 1024 aaKnown RBP12.66□□□□□ -0.38
LINC00649-217ENST00000616030 MYH1P12882 1939 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms