RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TTLL12Q14166 644 aaPredicted RBP19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 LRRFIP1Q32MZ4 808 aaKnown RBP19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 SH3BP5LQ7L8J4 393 aa19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 CEP350Q5VT06 3117 aa19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 DDTLA6NHG4 134 aaPredicted RBP19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 PPP1R12BO60237 982 aaPredicted RBP19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 DEFB115Q30KQ5 88 aa19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 LCORLQ8N3X6 602 aa19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 DNAJC5GQ8N7S2 189 aa19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 HHIPL1Q96JK4 782 aa19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 PUS7LQ9H0K6 701 aaKnown RBP19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 OSBPL5Q9H0X9 879 aaPredicted RBP19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 MKRN1Q9UHC7 482 aaKnown RBP19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 GTF3C3Q9Y5Q9 886 aa19.97■□□□□ 0.79
CCDC28A-202ENST00000611852 AK9Q5TCS8 1911 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 FLT1P17948 1338 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 UBE2Q2LH0YL09 131 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 MAP3K11Q16584 847 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 ARMC9Q7Z3E5 817 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 MAPKAPK5Q8IW41 473 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 APPBP2Q92624 585 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 HOOK2Q96ED9 719 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 CSRNP1Q96S65 589 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 PPP4R2Q9NY27 417 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 ANGEL1Q9UNK9 670 aaKnown RBP19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 ATRNL1Q5VV63 1379 aa19.96■□□□□ 0.79
CCDC28A-202ENST00000611852 COL2A1P02458 1487 aaPredicted RBP19.95■□□□□ 0.78
CCDC28A-202ENST00000611852 TRIM6-TRIM34B2RNG4 842 aa19.95■□□□□ 0.78
CCDC28A-202ENST00000611852 USP2O75604 605 aaPredicted RBP19.95■□□□□ 0.78
CCDC28A-202ENST00000611852 MBD4O95243 580 aa19.95■□□□□ 0.78
CCDC28A-202ENST00000611852 ZSCAN29Q8IWY8 852 aaPredicted RBP19.95■□□□□ 0.78
CCDC28A-202ENST00000611852 OSBP2Q969R2 916 aa19.95■□□□□ 0.78
CCDC28A-202ENST00000611852 ARMT1Q9H993 441 aa19.95■□□□□ 0.78
CCDC28A-202ENST00000611852 RILPL2Q969X0 211 aa19.94■□□□□ 0.78
CCDC28A-202ENST00000611852 AIDAQ96BJ3 306 aa19.94■□□□□ 0.78
CCDC28A-202ENST00000611852 CRNKL1Q9BZJ0 848 aaKnown RBP19.94■□□□□ 0.78
CCDC28A-202ENST00000611852 USP5P45974 858 aa19.93■□□□□ 0.78
CCDC28A-202ENST00000611852 LDLRAD1Q5T700 205 aa19.93■□□□□ 0.78
CCDC28A-202ENST00000611852 TTC22Q5TAA0 569 aa19.93■□□□□ 0.78
CCDC28A-202ENST00000611852 DCAF15Q66K64 600 aa19.93■□□□□ 0.78
CCDC28A-202ENST00000611852 MIGA2Q7L4E1 593 aa19.93■□□□□ 0.78
CCDC28A-202ENST00000611852 TICAM2Q86XR7 235 aa19.93■□□□□ 0.78
CCDC28A-202ENST00000611852 IREB2P48200 963 aaKnown RBP19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 ZMYM1Q5SVZ6 1142 aa19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 RGMBQ6NW40 437 aa19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 KLRG1Q96E93 195 aa19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 DHX36Q9H2U1 1008 aaKnown RBP19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 GSPT1P15170 499 aaKnown RBP19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 VEGFBP49765 207 aa19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 CYP4F22Q6NT55 531 aa19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 PAXIP1Q6ZW49 1069 aaPredicted RBP19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 SKAP1Q86WV1 359 aa19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 SDR42E1Q8WUS8 393 aa19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 STRBPQ96SI9 672 aaKnown RBP19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 SEC62Q99442 399 aaKnown RBP19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 PALD1Q9ULE6 856 aa19.92■□□□□ 0.78
CCDC28A-202ENST00000611852 UNCXA6NJT0 531 aa19.91■□□□□ 0.78
CCDC28A-202ENST00000611852 M0R2C6 588 aa19.91■□□□□ 0.78
CCDC28A-202ENST00000611852 PRKAB2O43741 272 aa19.91■□□□□ 0.78
CCDC28A-202ENST00000611852 ZNF157P51786 506 aaPredicted RBP19.91■□□□□ 0.78
CCDC28A-202ENST00000611852 MAP3K10Q02779 954 aa19.91■□□□□ 0.78
CCDC28A-202ENST00000611852 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.91■□□□□ 0.78
CCDC28A-202ENST00000611852 CAPNS2Q96L46 248 aa19.91■□□□□ 0.78
CCDC28A-202ENST00000611852 SAP30BPQ9UHR5 308 aaKnown RBP19.91■□□□□ 0.78
CCDC28A-202ENST00000611852 OTOFQ9HC10 1997 aa19.9■□□□□ 0.78
CCDC28A-202ENST00000611852 ANKRD13AQ8IZ07 590 aa19.9■□□□□ 0.78
CCDC28A-202ENST00000611852 ZNF341Q9BYN7 854 aa19.9■□□□□ 0.78
CCDC28A-202ENST00000611852 DCP1AQ9NPI6 582 aaPredicted RBP19.9■□□□□ 0.78
CCDC28A-202ENST00000611852 PI4KBQ9UBF8 816 aa19.9■□□□□ 0.78
CCDC28A-202ENST00000611852 MYH1P12882 1939 aa19.9■□□□□ 0.78
CCDC28A-202ENST00000611852 DDX60LQ5H9U9 1706 aaKnown RBP19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 GPAA1O43292 621 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 SLURP2P0DP57 97 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 ECE1P42892 770 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 CLMNQ96JQ2 1002 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 WRNIP1Q96S55 665 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 ATP8A2Q9NTI2 1148 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 ZNF112Q9UJU3 913 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 SLC4A4Q9Y6R1 1079 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 SIPA1L1O43166 1804 aa19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 WDR33Q9C0J8 1336 aaKnown RBP19.89■□□□□ 0.77
CCDC28A-202ENST00000611852 TBC1D12O60347 775 aa19.88■□□□□ 0.77
CCDC28A-202ENST00000611852 SDSP20132 328 aa19.88■□□□□ 0.77
CCDC28A-202ENST00000611852 MAP3K9P80192 1104 aa19.88■□□□□ 0.77
CCDC28A-202ENST00000611852 GRM1Q13255 1194 aa19.88■□□□□ 0.77
CCDC28A-202ENST00000611852 CCDC102AQ96A19 550 aa19.88■□□□□ 0.77
CCDC28A-202ENST00000611852 NAV1Q8NEY1 1877 aa19.88■□□□□ 0.77
CCDC28A-202ENST00000611852 PHF20L1A8MW92 1017 aa19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 FAM155AB1AL88 458 aaPredicted RBP19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 SLC10A3P09131 477 aa19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 VGLL4Q14135 290 aa19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 SLC4A8Q2Y0W8 1093 aa19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 METTL16Q86W50 562 aaKnown RBP19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 RASAL3Q86YV0 1011 aa19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 FAM227BQ96M60 508 aa19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 HELLSQ9NRZ9 838 aa19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 MCM9Q9NXL9 1143 aa19.87■□□□□ 0.77
CCDC28A-202ENST00000611852 A0A0D9SFI3 127 aa19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 FAM196BA6NMK8 535 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms