RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 KARSQ15046 597 aaKnown RBP9.91□□□□□ -0.82
LIG4-204ENST00000611712 KIAA1328Q86T90 577 aa9.91□□□□□ -0.82
LIG4-204ENST00000611712 NBPF5PQ86XG9 351 aaPredicted RBP9.91□□□□□ -0.82
LIG4-204ENST00000611712 NOSTRINQ8IVI9 506 aa9.91□□□□□ -0.82
LIG4-204ENST00000611712 NOC3LQ8WTT2 800 aaKnown RBP9.91□□□□□ -0.82
LIG4-204ENST00000611712 ZNF215Q9UL58 517 aaPredicted RBP9.91□□□□□ -0.82
LIG4-204ENST00000611712 JAG2Q9Y219 1238 aa9.91□□□□□ -0.82
LIG4-204ENST00000611712 VWA3AA6NCI4 1184 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 MCAMP43121 646 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 EXOSC10Q01780 885 aaKnown RBP9.9□□□□□ -0.82
LIG4-204ENST00000611712 ST3GAL1Q11201 340 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 SCARF1Q14162 830 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 PARP10Q53GL7 1025 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 SMAP1Q8IYB5 467 aaPredicted RBP9.9□□□□□ -0.82
LIG4-204ENST00000611712 TRMT44Q8IYL2 757 aaKnown RBP9.9□□□□□ -0.82
LIG4-204ENST00000611712 TTLL11Q8NHH1 800 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 PIGBQ92521 554 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 DEF6Q9H4E7 631 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 SPTLC3Q9NUV7 552 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 OGFRQ9NZT2 677 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 PIP4K2BP78356 416 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 POSTNQ15063 836 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.9□□□□□ -0.82
LIG4-204ENST00000611712 PXDNQ92626 1479 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 SSBP05455 408 aaKnown RBP eCLIP9.9□□□□□ -0.82
LIG4-204ENST00000611712 CALM1P0DP23 149 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 CALM2P0DP24 149 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 CALM3P0DP25 149 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 HLFQ16534 295 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 ZNF654Q8IZM8 581 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 MLKLQ8NB16 471 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 NLRP3Q96P20 1036 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 CTAGE1Q96RT6 745 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 KCNF1Q9H3M0 494 aa9.9□□□□□ -0.82
LIG4-204ENST00000611712 PIH1D3Q9NQM4 214 aaKnown RBP9.9□□□□□ -0.82
LIG4-204ENST00000611712 C1orf167Q5SNV9 1468 aa9.9□□□□□ -0.83
LIG4-204ENST00000611712 DLG5Q8TDM6 1919 aa9.9□□□□□ -0.83
LIG4-204ENST00000611712 A0A0G2JLW4 131 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 MCM7P33993 719 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 SRRTQ9BXP5 876 aaKnown RBP9.89□□□□□ -0.83
LIG4-204ENST00000611712 TANGO6Q9C0B7 1094 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 ZNF287Q9HBT7 754 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 VAT1LQ9HCJ6 419 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 LZTFL1Q9NQ48 299 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 CCDC87Q9NVE4 849 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 FANCLQ9NW38 375 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 VPS54Q9P1Q0 977 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 SERTAD1Q9UHV2 236 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 PCDHA5Q9Y5H7 936 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 CCDC175P0C221 793 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 EPS15P42566 896 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 CCDC144BQ3MJ40 725 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 JAKMIP3Q5VZ66 844 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 PLA2G4DQ86XP0 818 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 TICAM2Q86XR7 235 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 PYM1Q9BRP8 204 aaKnown RBP9.89□□□□□ -0.83
LIG4-204ENST00000611712 MCM9Q9NXL9 1143 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 SEC63Q9UGP8 760 aaKnown RBP9.89□□□□□ -0.83
LIG4-204ENST00000611712 C3P01024 1663 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.89□□□□□ -0.83
LIG4-204ENST00000611712 STAT6P42226 847 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 ZNF827Q17R98 1081 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 KRBA2Q6ZNG9 492 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 SDR42E1Q8WUS8 393 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 SH2B2O14492 632 aaPredicted RBP9.89□□□□□ -0.83
LIG4-204ENST00000611712 CLSTN1O94985 981 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 IQUBQ8NA54 791 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 FANCBQ8NB91 859 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 ISCA1Q9BUE6 129 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 TCP11L1Q9NUJ3 509 aa9.89□□□□□ -0.83
LIG4-204ENST00000611712 PALLDQ8WX93 1383 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 SNAP23O00161 211 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 EIF3JO75822 258 aaKnown RBP9.88□□□□□ -0.83
LIG4-204ENST00000611712 PPARAQ07869 468 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 IKQ13123 557 aaPredicted RBP9.88□□□□□ -0.83
LIG4-204ENST00000611712 FMR1NBQ8N0W7 255 aaPredicted RBP9.88□□□□□ -0.83
LIG4-204ENST00000611712 SETDB2Q96T68 719 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 FUCA2Q9BTY2 467 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 ZHX3Q9H4I2 956 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 ZSWIM5Q9P217 1185 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 MON2Q7Z3U7 1717 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 PRKAB2O43741 272 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 BAG3O95817 575 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 SPTY2D1Q68D10 685 aaPredicted RBP9.88□□□□□ -0.83
LIG4-204ENST00000611712 SARM1Q6SZW1 724 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 BRINP3Q76B58 766 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 MB21D2Q8IYB1 491 aaPredicted RBP9.88□□□□□ -0.83
LIG4-204ENST00000611712 STAMQ92783 540 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 IL17RAQ96F46 866 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 AK7Q96M32 723 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 KRT18P05783 430 aaKnown RBP9.88□□□□□ -0.83
LIG4-204ENST00000611712 SPAG1Q07617 926 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 SAMD1Q6SPF0 538 aaPredicted RBP9.88□□□□□ -0.83
LIG4-204ENST00000611712 CCDC148Q8NFR7 591 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 SMARCC1Q92922 1105 aaPredicted RBP9.88□□□□□ -0.83
LIG4-204ENST00000611712 CCDC102AQ96A19 550 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 TRIM47Q96LD4 638 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 INCENPQ9NQS7 918 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 SEC31BQ9NQW1 1179 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 RMND1Q9NWS8 449 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms