RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ANKRD45Q5TZF3 282 aa20.46■□□□□ 0.87
TRIM28-215ENST00000601150 ZSCAN29Q8IWY8 852 aaPredicted RBP20.46■□□□□ 0.87
TRIM28-215ENST00000601150 EDC3Q96F86 508 aaKnown RBP20.46■□□□□ 0.87
TRIM28-215ENST00000601150 CLMNQ96JQ2 1002 aa20.46■□□□□ 0.87
TRIM28-215ENST00000601150 COL2A1P02458 1487 aaPredicted RBP20.45■□□□□ 0.86
TRIM28-215ENST00000601150 IRX6P78412 446 aaPredicted RBP20.45■□□□□ 0.86
TRIM28-215ENST00000601150 MAP3K9P80192 1104 aa20.45■□□□□ 0.86
TRIM28-215ENST00000601150 CERS3Q8IU89 383 aa20.45■□□□□ 0.86
TRIM28-215ENST00000601150 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.45■□□□□ 0.867e-7■□□□□ 11
TRIM28-215ENST00000601150 BEGAINQ9BUH8 593 aa20.45■□□□□ 0.86
TRIM28-215ENST00000601150 ZNF341Q9BYN7 854 aa20.45■□□□□ 0.86
TRIM28-215ENST00000601150 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.45■□□□□ 0.86
TRIM28-215ENST00000601150 PDE6AP16499 860 aa20.44■□□□□ 0.86
TRIM28-215ENST00000601150 SLC9C2Q5TAH2 1124 aa20.44■□□□□ 0.86
TRIM28-215ENST00000601150 MIGA2Q7L4E1 593 aa20.44■□□□□ 0.86
TRIM28-215ENST00000601150 SH3BP5LQ7L8J4 393 aa20.44■□□□□ 0.86
TRIM28-215ENST00000601150 REM2Q8IYK8 340 aaPredicted RBP20.44■□□□□ 0.86
TRIM28-215ENST00000601150 CSRNP1Q96S65 589 aa20.44■□□□□ 0.86
TRIM28-215ENST00000601150 CSADQ9Y600 493 aa20.44■□□□□ 0.86
TRIM28-215ENST00000601150 TTC41PQ6P2S7 1318 aa20.44■□□□□ 0.86
TRIM28-215ENST00000601150 ATRNL1Q5VV63 1379 aa20.44■□□□□ 0.86
TRIM28-215ENST00000601150 FOXN1O15353 648 aa20.43■□□□□ 0.86
TRIM28-215ENST00000601150 DYNLL1P63167 89 aaKnown RBP20.43■□□□□ 0.86
TRIM28-215ENST00000601150 SPRYD7Q5W111 196 aa20.43■□□□□ 0.86
TRIM28-215ENST00000601150 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-215ENST00000601150 MIGA1Q8NAN2 632 aa20.43■□□□□ 0.86
TRIM28-215ENST00000601150 WRNIP1Q96S55 665 aa20.43■□□□□ 0.86
TRIM28-215ENST00000601150 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.43■□□□□ 0.861e-8■■■□□ 14.9
TRIM28-215ENST00000601150 OSBPL5Q9H0X9 879 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-215ENST00000601150 PCNTO95613 3336 aa20.43■□□□□ 0.86
TRIM28-215ENST00000601150 MYH1P12882 1939 aa20.43■□□□□ 0.86
TRIM28-215ENST00000601150 DDTLA6NHG4 134 aaPredicted RBP20.42■□□□□ 0.86
TRIM28-215ENST00000601150 IGHDP01880 384 aa20.42■□□□□ 0.86
TRIM28-215ENST00000601150 MKRN3Q13064 507 aaKnown RBP20.42■□□□□ 0.86
TRIM28-215ENST00000601150 VGLL4Q14135 290 aa20.42■□□□□ 0.86
TRIM28-215ENST00000601150 TSHZ3Q63HK5 1081 aa20.42■□□□□ 0.86
TRIM28-215ENST00000601150 SMC5Q8IY18 1101 aa20.42■□□□□ 0.86
TRIM28-215ENST00000601150 WNK4Q96J92 1243 aa20.42■□□□□ 0.86
TRIM28-215ENST00000601150 ERC2O15083 957 aa20.41■□□□□ 0.86
TRIM28-215ENST00000601150 ZBTB48P10074 688 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-215ENST00000601150 MX1P20591 662 aa20.41■□□□□ 0.86
TRIM28-215ENST00000601150 CTCFP49711 727 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-215ENST00000601150 OTUD7AQ8TE49 926 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-215ENST00000601150 TGFBRAP1Q8WUH2 860 aa20.41■□□□□ 0.86
TRIM28-215ENST00000601150 ELP3Q9H9T3 547 aa20.41■□□□□ 0.86
TRIM28-215ENST00000601150 ZNF112Q9UJU3 913 aa20.41■□□□□ 0.86
TRIM28-215ENST00000601150 ZNF532Q9HCE3 1301 aa20.41■□□□□ 0.86
TRIM28-215ENST00000601150 MAGEB6P1A0A0J9YX57 407 aa20.4■□□□□ 0.86
TRIM28-215ENST00000601150 TCRBV5S4A2TA0A5A2 114 aa20.4■□□□□ 0.86
TRIM28-215ENST00000601150 CA12O43570 354 aa20.4■□□□□ 0.86
TRIM28-215ENST00000601150 FLT1P17948 1338 aa20.4■□□□□ 0.86
TRIM28-215ENST00000601150 MAPKAPK5Q8IW41 473 aa20.4■□□□□ 0.86
TRIM28-215ENST00000601150 SIPA1L1O43166 1804 aa20.39■□□□□ 0.86
TRIM28-215ENST00000601150 SALL3Q9BXA9 1300 aa20.39■□□□□ 0.85
TRIM28-215ENST00000601150 GLRX3O76003 335 aaKnown RBP20.39■□□□□ 0.85
TRIM28-215ENST00000601150 ADD2P35612 726 aa20.39■□□□□ 0.85
TRIM28-215ENST00000601150 MAP3K10Q02779 954 aa20.39■□□□□ 0.85
TRIM28-215ENST00000601150 ZSCAN25Q6NSZ9 544 aa20.39■□□□□ 0.85
TRIM28-215ENST00000601150 ZKSCAN4Q969J2 545 aaPredicted RBP20.39■□□□□ 0.85
TRIM28-215ENST00000601150 OPTNQ96CV9 577 aa20.39■□□□□ 0.85
TRIM28-215ENST00000601150 RIOK1Q9BRS2 568 aaKnown RBP20.39■□□□□ 0.85
TRIM28-215ENST00000601150 NAV1Q8NEY1 1877 aa20.39■□□□□ 0.85
TRIM28-215ENST00000601150 INPP5BP32019 993 aa20.38■□□□□ 0.85
TRIM28-215ENST00000601150 SREBF2Q12772 1141 aa20.38■□□□□ 0.85
TRIM28-215ENST00000601150 PI4K2BQ8TCG2 481 aa20.38■□□□□ 0.85
TRIM28-215ENST00000601150 DHX36Q9H2U1 1008 aaKnown RBP20.38■□□□□ 0.85
TRIM28-215ENST00000601150 SNCAIPQ9Y6H5 919 aa20.38■□□□□ 0.85
TRIM28-215ENST00000601150 DOCK1Q14185 1865 aa20.38■□□□□ 0.85
TRIM28-215ENST00000601150 MANSC4A6NHS7 340 aaPredicted RBP20.37■□□□□ 0.85
TRIM28-215ENST00000601150 SPDYE5A6NIY4 337 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 TBC1D12O60347 775 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 HSPA8P11142 646 aaKnown RBP20.37■□□□□ 0.85
TRIM28-215ENST00000601150 GJA5P36382 358 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 USP5P45974 858 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 TM4SF4P48230 202 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 UBE3CQ15386 1083 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 B4GALNT3Q6L9W6 998 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 KBTBD3Q8NAB2 608 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 LNPKQ9C0E8 428 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 ATAD5Q96QE3 1844 aa20.37■□□□□ 0.85
TRIM28-215ENST00000601150 DDX60LQ5H9U9 1706 aaKnown RBP20.36■□□□□ 0.85
TRIM28-215ENST00000601150 PHF20L1A8MW92 1017 aa20.36■□□□□ 0.85
TRIM28-215ENST00000601150 INHBEP58166 350 aa20.36■□□□□ 0.85
TRIM28-215ENST00000601150 NOL9Q5SY16 702 aaKnown RBP20.36■□□□□ 0.85
TRIM28-215ENST00000601150 ERO1BQ86YB8 467 aa20.36■□□□□ 0.85
TRIM28-215ENST00000601150 CNKSR2Q8WXI2 1034 aa20.36■□□□□ 0.85
TRIM28-215ENST00000601150 OTUD5Q96G74 571 aa20.36■□□□□ 0.85
TRIM28-215ENST00000601150 CRNKL1Q9BZJ0 848 aaKnown RBP20.36■□□□□ 0.85
TRIM28-215ENST00000601150 SAGE1Q9NXZ1 904 aa20.36■□□□□ 0.85
TRIM28-215ENST00000601150 PI4KBQ9UBF8 816 aa20.36■□□□□ 0.85
TRIM28-215ENST00000601150 STAP2Q9UGK3 403 aa20.36■□□□□ 0.85
TRIM28-215ENST00000601150 NUCB1Q02818 461 aa20.35■□□□□ 0.85
TRIM28-215ENST00000601150 CHD1LQ86WJ1 897 aa20.35■□□□□ 0.85
TRIM28-215ENST00000601150 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.35■□□□□ 0.85
TRIM28-215ENST00000601150 RNF186Q9NXI6 227 aa20.35■□□□□ 0.85
TRIM28-215ENST00000601150 SAP30BPQ9UHR5 308 aaKnown RBP20.35■□□□□ 0.85
TRIM28-215ENST00000601150 HERC5Q9UII4 1024 aaKnown RBP20.35■□□□□ 0.85
TRIM28-215ENST00000601150 SLURP2P0DP57 97 aa20.34■□□□□ 0.85
TRIM28-215ENST00000601150 LBX1P52954 281 aa20.34■□□□□ 0.85
TRIM28-215ENST00000601150 PDE1AP54750 535 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms