RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 HOOK2Q96ED9 719 aa19.73■□□□□ 0.75
LSM4-206ENST00000600289 USP40Q9NVE5 1235 aa19.73■□□□□ 0.75
LSM4-206ENST00000600289 ENTPD3O75355 529 aa19.72■□□□□ 0.75
LSM4-206ENST00000600289 RHBDL3P58872 404 aa19.72■□□□□ 0.75
LSM4-206ENST00000600289 NOM1Q5C9Z4 860 aaKnown RBP19.72■□□□□ 0.75
LSM4-206ENST00000600289 PIH1D3Q9NQM4 214 aaKnown RBP19.72■□□□□ 0.75
LSM4-206ENST00000600289 FAM198AQ9UFP1 575 aa19.72■□□□□ 0.75
LSM4-206ENST00000600289 ANGEL1Q9UNK9 670 aaKnown RBP19.72■□□□□ 0.75
LSM4-206ENST00000600289 COLQQ9Y215 455 aaPredicted RBP19.72■□□□□ 0.75
LSM4-206ENST00000600289 GPR25O00155 361 aa19.71■□□□□ 0.75
LSM4-206ENST00000600289 USP2O75604 605 aaPredicted RBP19.71■□□□□ 0.75
LSM4-206ENST00000600289 ATP5JP18859 108 aa19.71■□□□□ 0.75
LSM4-206ENST00000600289 IREB2P48200 963 aaKnown RBP19.71■□□□□ 0.75
LSM4-206ENST00000600289 NFIAQ12857 509 aa19.71■□□□□ 0.75
LSM4-206ENST00000600289 TTF1Q15361 905 aaPredicted RBP19.71■□□□□ 0.75
LSM4-206ENST00000600289 NAA16Q6N069 864 aaPredicted RBP19.71■□□□□ 0.75
LSM4-206ENST00000600289 CDAN1Q8IWY9 1227 aa19.71■□□□□ 0.75
LSM4-206ENST00000600289 SUPT16HQ9Y5B9 1047 aaKnown RBP19.71■□□□□ 0.75
LSM4-206ENST00000600289 CEP290O15078 2479 aa19.7■□□□□ 0.74
LSM4-206ENST00000600289 SIPA1L1O43166 1804 aa19.7■□□□□ 0.74
LSM4-206ENST00000600289 WDHD1O75717 1129 aaPredicted RBP19.7■□□□□ 0.74
LSM4-206ENST00000600289 PPP4CP60510 307 aa19.7■□□□□ 0.74
LSM4-206ENST00000600289 DDX60LQ5H9U9 1706 aaKnown RBP19.7■□□□□ 0.74
LSM4-206ENST00000600289 ATRNL1Q5VV63 1379 aa19.7■□□□□ 0.74
LSM4-206ENST00000600289 MYH1P12882 1939 aa19.69■□□□□ 0.74
LSM4-206ENST00000600289 SMARCA5O60264 1052 aaPredicted RBP19.69■□□□□ 0.74
LSM4-206ENST00000600289 PRKG1Q13976 671 aa19.69■□□□□ 0.74
LSM4-206ENST00000600289 ANKRD13AQ8IZ07 590 aa19.69■□□□□ 0.74
LSM4-206ENST00000600289 RANBP2P49792 3224 aaKnown RBP19.68■□□□□ 0.74
LSM4-206ENST00000600289 RGS3P49796 1198 aa19.68■□□□□ 0.74
LSM4-206ENST00000600289 CERS3Q8IU89 383 aa19.68■□□□□ 0.74
LSM4-206ENST00000600289 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.68■□□□□ 0.742e-8■■■□□ 17.4
LSM4-206ENST00000600289 HAUS7Q99871 368 aa19.68■□□□□ 0.74
LSM4-206ENST00000600289 NOL10Q9BSC4 688 aaKnown RBP19.68■□□□□ 0.74
LSM4-206ENST00000600289 ANTXR1Q9H6X2 564 aa19.68■□□□□ 0.74
LSM4-206ENST00000600289 FZD1Q9UP38 647 aa19.68■□□□□ 0.74
LSM4-206ENST00000600289 DOCK1Q14185 1865 aa19.68■□□□□ 0.74
LSM4-206ENST00000600289 NAV1Q8NEY1 1877 aa19.68■□□□□ 0.74
LSM4-206ENST00000600289 ATAD5Q96QE3 1844 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 CUL9Q8IWT3 2517 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 BAG3O95817 575 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 PLCG2P16885 1265 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 MAP3K12Q12852 859 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 DCAF15Q66K64 600 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 ADGRA1Q86SQ6 560 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 ECHDC1Q9NTX5 307 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 NDUFB9Q9Y6M9 179 aa19.67■□□□□ 0.74
LSM4-206ENST00000600289 IDH1O75874 414 aaKnown RBP19.66■□□□□ 0.74
LSM4-206ENST00000600289 ZBTB48P10074 688 aaPredicted RBP19.66■□□□□ 0.74
LSM4-206ENST00000600289 TCP10Q12799 353 aa19.66■□□□□ 0.74
LSM4-206ENST00000600289 EXOC6Q8TAG9 804 aa19.66■□□□□ 0.74
LSM4-206ENST00000600289 DDX4Q9NQI0 724 aaKnown RBP19.66■□□□□ 0.74
LSM4-206ENST00000600289 MAP3K10Q02779 954 aa19.65■□□□□ 0.74
LSM4-206ENST00000600289 ZFPM1Q8IX07 1006 aa19.65■□□□□ 0.74
LSM4-206ENST00000600289 GPATCH3Q96I76 525 aa19.65■□□□□ 0.74
LSM4-206ENST00000600289 ZNF341Q9BYN7 854 aa19.65■□□□□ 0.74
LSM4-206ENST00000600289 R3HDMLQ9H3Y0 253 aa19.65■□□□□ 0.74
LSM4-206ENST00000600289 PAG1Q9NWQ8 432 aa19.65■□□□□ 0.74
LSM4-206ENST00000600289 GOLIM4O00461 696 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 TM4SF4P48230 202 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 MAP3K9P80192 1104 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 SPRYD7Q5W111 196 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.64■□□□□ 0.73
LSM4-206ENST00000600289 SH3BP5LQ7L8J4 393 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 TEX11Q8IYF3 940 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 MAGEB6Q8N7X4 407 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 SH3RF3Q8TEJ3 882 aaPredicted RBP19.64■□□□□ 0.73
LSM4-206ENST00000600289 SLC10A4Q96EP9 437 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 CLMNQ96JQ2 1002 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 DNAJC2Q99543 621 aaKnown RBP19.64■□□□□ 0.73
LSM4-206ENST00000600289 CFHR5Q9BXR6 569 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 AATFQ9NY61 560 aaKnown RBP eCLIP19.64■□□□□ 0.73
LSM4-206ENST00000600289 ZNF112Q9UJU3 913 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 TTC41PQ6P2S7 1318 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 PHIPQ8WWQ0 1821 aa19.64■□□□□ 0.73
LSM4-206ENST00000600289 FKTNO75072 461 aa19.63■□□□□ 0.73
LSM4-206ENST00000600289 CYP7A1P22680 504 aa19.63■□□□□ 0.73
LSM4-206ENST00000600289 WNK4Q96J92 1243 aa19.63■□□□□ 0.73
LSM4-206ENST00000600289 OSBPL5Q9H0X9 879 aaPredicted RBP19.63■□□□□ 0.73
LSM4-206ENST00000600289 BOLA2Q9H3K6 86 aa19.63■□□□□ 0.73
LSM4-206ENST00000600289 SALL3Q9BXA9 1300 aa19.62■□□□□ 0.73
LSM4-206ENST00000600289 PDE6AP16499 860 aa19.62■□□□□ 0.73
LSM4-206ENST00000600289 PICALMQ13492 652 aa19.62■□□□□ 0.73
LSM4-206ENST00000600289 VGLL4Q14135 290 aa19.62■□□□□ 0.73
LSM4-206ENST00000600289 SMC5Q8IY18 1101 aa19.62■□□□□ 0.73
LSM4-206ENST00000600289 RWDD1Q9H446 243 aaPredicted RBP19.62■□□□□ 0.73
LSM4-206ENST00000600289 CSADQ9Y600 493 aa19.62■□□□□ 0.73
LSM4-206ENST00000600289 PTPRFP10586 1907 aa19.61■□□□□ 0.73
LSM4-206ENST00000600289 TCRBV5S4A2TA0A5A2 114 aa19.61■□□□□ 0.73
LSM4-206ENST00000600289 DDTLA6NHG4 134 aaPredicted RBP19.61■□□□□ 0.73
LSM4-206ENST00000600289 TBC1D12O60347 775 aa19.61■□□□□ 0.73
LSM4-206ENST00000600289 EN2P19622 333 aaPredicted RBP19.61■□□□□ 0.73
LSM4-206ENST00000600289 SLC17A8Q8NDX2 589 aa19.61■□□□□ 0.73
LSM4-206ENST00000600289 OTUD5Q96G74 571 aa19.61■□□□□ 0.73
LSM4-206ENST00000600289 WRNIP1Q96S55 665 aa19.61■□□□□ 0.73
LSM4-206ENST00000600289 FLT1P17948 1338 aa19.6■□□□□ 0.73
LSM4-206ENST00000600289 SPDYE5A6NIY4 337 aa19.6■□□□□ 0.73
LSM4-206ENST00000600289 INHBEP58166 350 aa19.6■□□□□ 0.73
LSM4-206ENST00000600289 SREBF2Q12772 1141 aa19.6■□□□□ 0.73
LSM4-206ENST00000600289 NOL9Q5SY16 702 aaKnown RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms