RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 PIH1D3Q9NQM4 214 aaKnown RBP13.15□□□□□ -0.3
VRK3-214ENST00000598553 ZNF112Q9UJU3 913 aa13.15□□□□□ -0.3
VRK3-214ENST00000598553 NOP58Q9Y2X3 529 aaKnown RBP13.15□□□□□ -0.3
VRK3-214ENST00000598553 CSADQ9Y600 493 aa13.15□□□□□ -0.3
VRK3-214ENST00000598553 GPR75-ASB3A0A0A6YYF3 556 aa13.14□□□□□ -0.31
VRK3-214ENST00000598553 PHF20L1A8MW92 1017 aa13.14□□□□□ -0.31
VRK3-214ENST00000598553 CYP2E1P05181 493 aaPredicted RBP13.14□□□□□ -0.31
VRK3-214ENST00000598553 ZAP70P43403 619 aa13.14□□□□□ -0.31
VRK3-214ENST00000598553 OS9Q13438 667 aaPredicted RBP13.14□□□□□ -0.31
VRK3-214ENST00000598553 MOGSQ13724 837 aa13.14□□□□□ -0.31
VRK3-214ENST00000598553 RRP1BQ14684 758 aaKnown RBP13.14□□□□□ -0.31
VRK3-214ENST00000598553 NOM1Q5C9Z4 860 aaKnown RBP13.14□□□□□ -0.31
VRK3-214ENST00000598553 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.14□□□□□ -0.31
VRK3-214ENST00000598553 FAM163AQ96GL9 167 aaPredicted RBP13.14□□□□□ -0.31
VRK3-214ENST00000598553 IDI2Q9BXS1 227 aa13.14□□□□□ -0.31
VRK3-214ENST00000598553 RBBP6Q7Z6E9 1792 aaKnown RBP13.14□□□□□ -0.31
VRK3-214ENST00000598553 NAV1Q8NEY1 1877 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 LOC285556D6RIA3 1793 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 BTBD19C9JJ37 291 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 ECM2O94769 699 aaPredicted RBP13.13□□□□□ -0.31
VRK3-214ENST00000598553 SHROOM1Q2M3G4 852 aaPredicted RBP13.13□□□□□ -0.31
VRK3-214ENST00000598553 GORABQ5T7V8 394 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 OTOP1Q7RTM1 612 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 ERO1BQ86YB8 467 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 ZGPATQ8N5A5 531 aaKnown RBP13.13□□□□□ -0.31
VRK3-214ENST00000598553 ARHGAP39Q9C0H5 1083 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 ANTXR1Q9H6X2 564 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 IL1RAPL2Q9NP60 686 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 GPR108Q9NPR9 543 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 RAI14Q9P0K7 980 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 MYH7P12883 1935 aa13.13□□□□□ -0.31
VRK3-214ENST00000598553 ENTPD3O75355 529 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 CTGFP29279 349 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 RGS19P49795 217 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 PPIL2Q13356 520 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 TAF1CQ15572 869 aaPredicted RBP13.12□□□□□ -0.31
VRK3-214ENST00000598553 TTC39AQ5SRH9 613 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 DCAF15Q66K64 600 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 SH3RF3Q8TEJ3 882 aaPredicted RBP13.12□□□□□ -0.31
VRK3-214ENST00000598553 RCAN3Q9UKA8 241 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 TRIM17Q9Y577 477 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 ADGRA2Q96PE1 1338 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 DOCK3Q8IZD9 2030 aa13.12□□□□□ -0.31
VRK3-214ENST00000598553 ALDH1A1P00352 501 aa13.11□□□□□ -0.31
VRK3-214ENST00000598553 GTF2A2P52657 109 aa13.11□□□□□ -0.31
VRK3-214ENST00000598553 INHBEP58166 350 aa13.11□□□□□ -0.31
VRK3-214ENST00000598553 NOL9Q5SY16 702 aaKnown RBP13.11□□□□□ -0.31
VRK3-214ENST00000598553 AATFQ9NY61 560 aaKnown RBP eCLIP13.11□□□□□ -0.31
VRK3-214ENST00000598553 APBB1O00213 710 aa13.1□□□□□ -0.31
VRK3-214ENST00000598553 UQCRFS1P1P0C7P4 283 aa13.1□□□□□ -0.31
VRK3-214ENST00000598553 DYNLL1P63167 89 aaKnown RBP13.1□□□□□ -0.31
VRK3-214ENST00000598553 JAG1P78504 1218 aa13.1□□□□□ -0.31
VRK3-214ENST00000598553 MAP3K10Q02779 954 aa13.1□□□□□ -0.31
VRK3-214ENST00000598553 SPTY2D1Q68D10 685 aaPredicted RBP13.1□□□□□ -0.31
VRK3-214ENST00000598553 FBXO46Q6PJ61 603 aaPredicted RBP13.1□□□□□ -0.31
VRK3-214ENST00000598553 ZSCAN29Q8IWY8 852 aaPredicted RBP13.1□□□□□ -0.31
VRK3-214ENST00000598553 ZBTB40Q9NUA8 1239 aa13.1□□□□□ -0.31
VRK3-214ENST00000598553 KCNH4Q9UQ05 1017 aa13.1□□□□□ -0.31
VRK3-214ENST00000598553 BAZ2AQ9UIF9 1905 aaKnown RBP13.09□□□□□ -0.31
VRK3-214ENST00000598553 HTTP42858 3142 aa13.09□□□□□ -0.31
VRK3-214ENST00000598553 PPATQ06203 517 aa13.09□□□□□ -0.31
VRK3-214ENST00000598553 SLC4A8Q2Y0W8 1093 aa13.09□□□□□ -0.31
VRK3-214ENST00000598553 GPAT2Q6NUI2 795 aa13.09□□□□□ -0.31
VRK3-214ENST00000598553 AACSQ86V21 672 aa13.09□□□□□ -0.31
VRK3-214ENST00000598553 OSBPL5Q9H0X9 879 aaPredicted RBP13.09□□□□□ -0.31
VRK3-214ENST00000598553 DNAJC18Q9H819 358 aa13.09□□□□□ -0.31
VRK3-214ENST00000598553 LRP2BPQ9P2M1 347 aa13.09□□□□□ -0.31
VRK3-214ENST00000598553 COL2A1P02458 1487 aaPredicted RBP13.09□□□□□ -0.31
VRK3-214ENST00000598553 CHGBP05060 677 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 CETPP11597 493 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 PTPRAP18433 802 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 SP3Q02447 781 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 EVX2Q03828 476 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 SNAPC2Q13487 334 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 SLFNL1Q499Z3 407 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 NAA16Q6N069 864 aaPredicted RBP13.08□□□□□ -0.32
VRK3-214ENST00000598553 SCYL3Q8IZE3 742 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 RHPN1Q8TCX5 695 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 EDC3Q96F86 508 aaKnown RBP13.08□□□□□ -0.32
VRK3-214ENST00000598553 ZNF512BQ96KM6 892 aaPredicted RBP13.08□□□□□ -0.32
VRK3-214ENST00000598553 BCL11AQ9H165 835 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 CPA4Q9UI42 421 aa13.08□□□□□ -0.32
VRK3-214ENST00000598553 POTEFA5A3E0 1075 aa13.07□□□□□ -0.32
VRK3-214ENST00000598553 MLLT1Q03111 559 aaPredicted RBP13.07□□□□□ -0.32
VRK3-214ENST00000598553 CCDC158Q5M9N0 1113 aa13.07□□□□□ -0.32
VRK3-214ENST00000598553 MAPKAPK5Q8IW41 473 aa13.07□□□□□ -0.32
VRK3-214ENST00000598553 TEX11Q8IYF3 940 aa13.07□□□□□ -0.32
VRK3-214ENST00000598553 MIGA1Q8NAN2 632 aa13.07□□□□□ -0.32
VRK3-214ENST00000598553 PTPN22Q9Y2R2 807 aa13.07□□□□□ -0.32
VRK3-214ENST00000598553 ZHX2Q9Y6X8 837 aa13.07□□□□□ -0.32
VRK3-214ENST00000598553 FLT1P17948 1338 aa13.07□□□□□ -0.32
VRK3-214ENST00000598553 MYH8P13535 1937 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 PDHXO00330 501 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 TLR2O60603 784 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 CYP2C8P10632 490 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 OTUD7BQ6GQQ9 843 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 SLF2Q8IX21 1173 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 TGFBRAP1Q8WUH2 860 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 HOOK2Q96ED9 719 aa13.06□□□□□ -0.32
VRK3-214ENST00000598553 ERO1AQ96HE7 468 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms