RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 ADORA1P30542 326 aa12.42□□□□□ -0.42
LIG1-209ENST00000596104 IL15P40933 162 aaPredicted RBP12.42□□□□□ -0.42
LIG1-209ENST00000596104 CCDC102BQ68D86 513 aa12.42□□□□□ -0.42
LIG1-209ENST00000596104 SLAIN1Q8ND83 568 aa12.42□□□□□ -0.42
LIG1-209ENST00000596104 FAM163AQ96GL9 167 aaPredicted RBP12.42□□□□□ -0.42
LIG1-209ENST00000596104 RNF208Q9H0X6 261 aa12.42□□□□□ -0.42
LIG1-209ENST00000596104 PRO3102Q9H379 93 aa12.42□□□□□ -0.42
LIG1-209ENST00000596104 RBM27Q9P2N5 1060 aaKnown RBP12.42□□□□□ -0.42
LIG1-209ENST00000596104 PA2G4Q9UQ80 394 aaKnown RBP12.42□□□□□ -0.42
LIG1-209ENST00000596104 AFG3L2Q9Y4W6 797 aa12.42□□□□□ -0.42
LIG1-209ENST00000596104 ZHX2Q9Y6X8 837 aa12.42□□□□□ -0.42
LIG1-209ENST00000596104 DDTLA6NHG4 134 aaPredicted RBP12.41□□□□□ -0.42
LIG1-209ENST00000596104 UBXN2AP68543 259 aa12.41□□□□□ -0.42
LIG1-209ENST00000596104 RASGRF1Q13972 1273 aa12.41□□□□□ -0.42
LIG1-209ENST00000596104 FASTKD5Q7L8L6 764 aaKnown RBP12.41□□□□□ -0.42
LIG1-209ENST00000596104 U2AF1L4Q8WU68 220 aaKnown RBP12.41□□□□□ -0.42
LIG1-209ENST00000596104 DPF3Q92784 378 aa12.41□□□□□ -0.42
LIG1-209ENST00000596104 UNC93B1Q9H1C4 597 aa12.41□□□□□ -0.42
LIG1-209ENST00000596104 COPRSQ9NQ92 184 aa12.41□□□□□ -0.42
LIG1-209ENST00000596104 DDX4Q9NQI0 724 aaKnown RBP12.41□□□□□ -0.42
LIG1-209ENST00000596104 PICK1Q9NRD5 415 aa12.41□□□□□ -0.42
LIG1-209ENST00000596104 SMC4Q9NTJ3 1288 aa12.41□□□□□ -0.42
LIG1-209ENST00000596104 BIN2Q9UBW5 565 aaPredicted RBP12.41□□□□□ -0.42
LIG1-209ENST00000596104 SLC45A1Q9Y2W3 748 aa12.41□□□□□ -0.42
LIG1-209ENST00000596104 PDS5AQ29RF7 1337 aaKnown RBP12.4□□□□□ -0.42
LIG1-209ENST00000596104 CTNND1O60716 968 aaKnown RBP12.4□□□□□ -0.42
LIG1-209ENST00000596104 FLT3LGP49771 235 aa12.4□□□□□ -0.42
LIG1-209ENST00000596104 ZGPATQ8N5A5 531 aaKnown RBP12.4□□□□□ -0.42
LIG1-209ENST00000596104 CDCA7LQ96GN5 454 aa12.4□□□□□ -0.42
LIG1-209ENST00000596104 HTATIP2Q9BUP3 242 aa12.4□□□□□ -0.42
LIG1-209ENST00000596104 LRRFIP2Q9Y608 721 aaKnown RBP12.4□□□□□ -0.42
LIG1-209ENST00000596104 ADCY3O60266 1144 aa12.39□□□□□ -0.43
LIG1-209ENST00000596104 FARP2O94887 1054 aaPredicted RBP12.39□□□□□ -0.43
LIG1-209ENST00000596104 SGPL1O95470 568 aa12.39□□□□□ -0.43
LIG1-209ENST00000596104 RHBDL3P58872 404 aa12.39□□□□□ -0.43
LIG1-209ENST00000596104 TIMM10P62072 90 aa12.39□□□□□ -0.43
LIG1-209ENST00000596104 IRF5Q13568 498 aa12.39□□□□□ -0.43
LIG1-209ENST00000596104 GADL1Q6ZQY3 521 aa12.39□□□□□ -0.43
LIG1-209ENST00000596104 CCDC84Q86UT8 332 aaPredicted RBP12.39□□□□□ -0.43
LIG1-209ENST00000596104 DZIP1Q86YF9 867 aaKnown RBP12.39□□□□□ -0.43
LIG1-209ENST00000596104 ZSCAN29Q8IWY8 852 aaPredicted RBP12.39□□□□□ -0.43
LIG1-209ENST00000596104 TRMT2AQ8IZ69 625 aaKnown RBP12.39□□□□□ -0.43
LIG1-209ENST00000596104 PXYLP1Q8TE99 480 aa12.39□□□□□ -0.43
LIG1-209ENST00000596104 ZNF384Q8TF68 577 aa12.39□□□□□ -0.43
LIG1-209ENST00000596104 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.39□□□□□ -0.43
LIG1-209ENST00000596104 MROH7-TTC4A0A0A0MT08 1334 aa12.38□□□□□ -0.43
LIG1-209ENST00000596104 ZBTB7BO15156 539 aaPredicted RBP12.38□□□□□ -0.43
LIG1-209ENST00000596104 INHAP05111 366 aa12.38□□□□□ -0.43
LIG1-209ENST00000596104 ELNP15502 786 aa12.38□□□□□ -0.43
LIG1-209ENST00000596104 BTDP43251 543 aa12.38□□□□□ -0.43
LIG1-209ENST00000596104 SLF2Q8IX21 1173 aa12.38□□□□□ -0.43
LIG1-209ENST00000596104 MEIS3Q99687 375 aa12.38□□□□□ -0.43
LIG1-209ENST00000596104 ABCF2Q9UG63 623 aa12.38□□□□□ -0.43
LIG1-209ENST00000596104 NOB1Q9ULX3 412 aaKnown RBP12.38□□□□□ -0.43
LIG1-209ENST00000596104 AGTPBP1Q9UPW5 1226 aa12.38□□□□□ -0.43
LIG1-209ENST00000596104 RANBP2P49792 3224 aaKnown RBP12.37□□□□□ -0.43
LIG1-209ENST00000596104 GPR75-ASB3A0A0A6YYF3 556 aa12.37□□□□□ -0.43
LIG1-209ENST00000596104 A0A1B0GUL7 405 aa12.37□□□□□ -0.43
LIG1-209ENST00000596104 TRIM75PA6NK02 468 aa12.37□□□□□ -0.43
LIG1-209ENST00000596104 TNPO2O14787 897 aaKnown RBP12.37□□□□□ -0.43
LIG1-209ENST00000596104 TBC1D12O60347 775 aa12.37□□□□□ -0.43
LIG1-209ENST00000596104 NPM3O75607 178 aaKnown RBP12.37□□□□□ -0.43
LIG1-209ENST00000596104 MECOMQ03112 1051 aa12.37□□□□□ -0.43
LIG1-209ENST00000596104 PICALMQ13492 652 aa12.37□□□□□ -0.43
LIG1-209ENST00000596104 SPTY2D1Q68D10 685 aaPredicted RBP12.37□□□□□ -0.43
LIG1-209ENST00000596104 SMCR8Q8TEV9 937 aaPredicted RBP12.37□□□□□ -0.43
LIG1-209ENST00000596104 API5Q9BZZ5 524 aaKnown RBP12.37□□□□□ -0.43
LIG1-209ENST00000596104 PAK6Q9NQU5 681 aaPredicted RBP12.37□□□□□ -0.43
LIG1-209ENST00000596104 HDAC5Q9UQL6 1122 aa12.37□□□□□ -0.43
LIG1-209ENST00000596104 NR2E3Q9Y5X4 410 aa12.37□□□□□ -0.43
LIG1-209ENST00000596104 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.37□□□□□ -0.43
LIG1-209ENST00000596104 FAM196BA6NMK8 535 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 CT47B1P0C2W7 299 aaPredicted RBP12.36□□□□□ -0.43
LIG1-209ENST00000596104 CAPN2P17655 700 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 MTX1Q13505 466 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 FAM110CQ1W6H9 321 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 TREML2Q5T2D2 321 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 ANKRD13CQ8N6S4 541 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 XAGE2Q96GT9 111 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 DEFB118Q96PH6 123 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 CRISPLD2Q9H0B8 497 aa12.36□□□□□ -0.43
LIG1-209ENST00000596104 TFCP2Q12800 502 aa12.35□□□□□ -0.43
LIG1-209ENST00000596104 MVPQ14764 893 aaKnown RBP12.35□□□□□ -0.43
LIG1-209ENST00000596104 ERICH6Q7L0X2 663 aa12.35□□□□□ -0.43
LIG1-209ENST00000596104 PROCA1Q8NCQ7 364 aaPredicted RBP12.35□□□□□ -0.43
LIG1-209ENST00000596104 HMG20BQ9P0W2 317 aa12.35□□□□□ -0.43
LIG1-209ENST00000596104 AKAP2Q9Y2D5 859 aa12.35□□□□□ -0.43
LIG1-209ENST00000596104 MYH13Q9UKX3 1938 aa12.35□□□□□ -0.43
LIG1-209ENST00000596104 COL2A1P02458 1487 aaPredicted RBP12.34□□□□□ -0.43
LIG1-209ENST00000596104 SZT2Q5T011 3432 aa12.34□□□□□ -0.43
LIG1-209ENST00000596104 MAP4K4O95819 1239 aaPredicted RBP12.34□□□□□ -0.43
LIG1-209ENST00000596104 TFRCP02786 760 aaKnown RBP12.34□□□□□ -0.43
LIG1-209ENST00000596104 SPP2Q13103 211 aa12.34□□□□□ -0.43
LIG1-209ENST00000596104 RRP1BQ14684 758 aaKnown RBP12.34□□□□□ -0.43
LIG1-209ENST00000596104 PI16Q6UXB8 463 aa12.34□□□□□ -0.43
LIG1-209ENST00000596104 COA7Q96BR5 231 aa12.34□□□□□ -0.43
LIG1-209ENST00000596104 NSUN4Q96CB9 384 aaKnown RBP12.34□□□□□ -0.43
LIG1-209ENST00000596104 OSBPL5Q9H0X9 879 aaPredicted RBP12.34□□□□□ -0.43
LIG1-209ENST00000596104 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.34□□□□□ -0.43
LIG1-209ENST00000596104 PNMA3Q9UL41 463 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms