RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 SUCLG2Q96I99 432 aa17.35■□□□□ 0.37
SHKBP1-208ENST00000595726 FAM161BQ96MY7 647 aa17.35■□□□□ 0.37
SHKBP1-208ENST00000595726 PHF20L1A8MW92 1017 aa17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 PTPRAP18433 802 aa17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 DIXDC1Q155Q3 683 aa17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 MROH5Q6ZUA9 1318 aa17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 SMCR8Q8TEV9 937 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 COA7Q96BR5 231 aa17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 GUCD1Q96NT3 240 aa17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 C9orf78Q9NZ63 289 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 AFG3L2Q9Y4W6 797 aa17.34■□□□□ 0.37
SHKBP1-208ENST00000595726 MAST3O60307 1309 aa17.33■□□□□ 0.36
SHKBP1-208ENST00000595726 METTL24Q5JXM2 366 aa17.33■□□□□ 0.36
SHKBP1-208ENST00000595726 CCDC84Q86UT8 332 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-208ENST00000595726 ANKLE1Q8NAG6 615 aa17.33■□□□□ 0.36
SHKBP1-208ENST00000595726 C11orf49Q9H6J7 331 aa17.33■□□□□ 0.36
SHKBP1-208ENST00000595726 DAGLAQ9Y4D2 1042 aa17.33■□□□□ 0.36
SHKBP1-208ENST00000595726 DOCK3Q8IZD9 2030 aa17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 RPTORQ8N122 1335 aa17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 VAMP4O75379 141 aa17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 WWC1Q8IX03 1113 aa17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 SCYL3Q8IZE3 742 aa17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 SPINK5Q9NQ38 1064 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 PICK1Q9NRD5 415 aa17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 USP40Q9NVE5 1235 aa17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 SUGT1Q9Y2Z0 365 aa17.32■□□□□ 0.36
SHKBP1-208ENST00000595726 AK9Q5TCS8 1911 aa17.31■□□□□ 0.36
SHKBP1-208ENST00000595726 TRIM75PA6NK02 468 aa17.31■□□□□ 0.36
SHKBP1-208ENST00000595726 POTEB2H3BUK9 544 aa17.31■□□□□ 0.36
SHKBP1-208ENST00000595726 PDE8BO95263 885 aa17.31■□□□□ 0.36
SHKBP1-208ENST00000595726 MDM2Q00987 491 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-208ENST00000595726 VGLL2Q8N8G2 317 aa17.31■□□□□ 0.36
SHKBP1-208ENST00000595726 MRS2Q9HD23 443 aa17.31■□□□□ 0.36
SHKBP1-208ENST00000595726 HMX1Q9NP08 348 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-208ENST00000595726 PFASO15067 1338 aa17.3■□□□□ 0.36
SHKBP1-208ENST00000595726 HMGCRP04035 888 aa17.3■□□□□ 0.36
SHKBP1-208ENST00000595726 TREML2Q5T2D2 321 aa17.3■□□□□ 0.36
SHKBP1-208ENST00000595726 SLC4A10Q6U841 1118 aa17.3■□□□□ 0.36
SHKBP1-208ENST00000595726 KLHDC4Q8TBB5 520 aa17.3■□□□□ 0.36
SHKBP1-208ENST00000595726 GJD2Q9UKL4 321 aa17.3■□□□□ 0.36
SHKBP1-208ENST00000595726 SLC45A1Q9Y2W3 748 aa17.3■□□□□ 0.36
SHKBP1-208ENST00000595726 MUC3AQ02505 3323 aa17.3■□□□□ 0.36
SHKBP1-208ENST00000595726 ATRNL1Q5VV63 1379 aa17.29■□□□□ 0.36
SHKBP1-208ENST00000595726 NBPF7P0C2Y1 421 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-208ENST00000595726 PRDX5P30044 214 aa17.29■□□□□ 0.36
SHKBP1-208ENST00000595726 SH3BP5LQ7L8J4 393 aa17.29■□□□□ 0.36
SHKBP1-208ENST00000595726 OGDHLQ9ULD0 1010 aa17.29■□□□□ 0.36
SHKBP1-208ENST00000595726 TTC28Q96AY4 2481 aa17.28■□□□□ 0.36
SHKBP1-208ENST00000595726 CDH23Q9H251 3354 aa17.28■□□□□ 0.36
SHKBP1-208ENST00000595726 BICC1Q9H694 974 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-208ENST00000595726 PRDM6Q9NQX0 595 aa17.28■□□□□ 0.36
SHKBP1-208ENST00000595726 AGTPBP1Q9UPW5 1226 aa17.28■□□□□ 0.36
SHKBP1-208ENST00000595726 FANCIQ9NVI1 1328 aa17.27■□□□□ 0.36
SHKBP1-208ENST00000595726 FGFR2P21802 821 aa17.27■□□□□ 0.36
SHKBP1-208ENST00000595726 RGS3P49796 1198 aa17.27■□□□□ 0.36
SHKBP1-208ENST00000595726 EXOSC9Q06265 439 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-208ENST00000595726 WDR66Q8TBY9 1149 aa17.27■□□□□ 0.36
SHKBP1-208ENST00000595726 TRIB2Q92519 343 aa17.27■□□□□ 0.36
SHKBP1-208ENST00000595726 LRRFIP2Q9Y608 721 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-208ENST00000595726 DDX60LQ5H9U9 1706 aaKnown RBP17.27■□□□□ 0.35
SHKBP1-208ENST00000595726 FAM110CQ1W6H9 321 aa17.26■□□□□ 0.35
SHKBP1-208ENST00000595726 LRRC26Q2I0M4 334 aa17.26■□□□□ 0.35
SHKBP1-208ENST00000595726 FAM109BQ6ICB4 259 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-208ENST00000595726 ZSCAN29Q8IWY8 852 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-208ENST00000595726 SRCIN1Q9C0H9 1055 aa17.26■□□□□ 0.35
SHKBP1-208ENST00000595726 DDTLA6NHG4 134 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-208ENST00000595726 PEX10O60683 326 aa17.25■□□□□ 0.35
SHKBP1-208ENST00000595726 ALDH1L1O75891 902 aa17.25■□□□□ 0.35
SHKBP1-208ENST00000595726 IFIT1P09914 478 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-208ENST00000595726 CYP2B6P20813 491 aa17.25■□□□□ 0.35
SHKBP1-208ENST00000595726 CCDC27Q2M243 656 aa17.25■□□□□ 0.35
SHKBP1-208ENST00000595726 ANKRD44Q8N8A2 993 aa17.25■□□□□ 0.35
SHKBP1-208ENST00000595726 CTNND1O60716 968 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-208ENST00000595726 COL6A1P12109 1028 aa17.24■□□□□ 0.35
SHKBP1-208ENST00000595726 MAP3K10Q02779 954 aa17.24■□□□□ 0.35
SHKBP1-208ENST00000595726 PUM3Q15397 648 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-208ENST00000595726 RABL6Q3YEC7 729 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-208ENST00000595726 IL16Q14005 1332 aa17.23■□□□□ 0.35
SHKBP1-208ENST00000595726 FAM196BA6NMK8 535 aa17.23■□□□□ 0.35
SHKBP1-208ENST00000595726 LDHBP07195 334 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-208ENST00000595726 PRKAR2AP13861 404 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-208ENST00000595726 SPP2Q13103 211 aa17.23■□□□□ 0.35
SHKBP1-208ENST00000595726 CDX2Q99626 313 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-208ENST00000595726 SALL2Q9Y467 1007 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-208ENST00000595726 ENTPD3O75355 529 aa17.22■□□□□ 0.35
SHKBP1-208ENST00000595726 MAP3K21Q5TCX8 1036 aa17.22■□□□□ 0.35
SHKBP1-208ENST00000595726 IDI2Q9BXS1 227 aa17.22■□□□□ 0.35
SHKBP1-208ENST00000595726 ASCC2Q9H1I8 757 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-208ENST00000595726 DDX4Q9NQI0 724 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-208ENST00000595726 PNMA3Q9UL41 463 aa17.22■□□□□ 0.35
SHKBP1-208ENST00000595726 GCLCP48506 637 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-208ENST00000595726 PICALMQ13492 652 aa17.21■□□□□ 0.35
SHKBP1-208ENST00000595726 LHX8Q68G74 356 aa17.21■□□□□ 0.35
SHKBP1-208ENST00000595726 MAFAQ8NHW3 353 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-208ENST00000595726 PTPRFP10586 1907 aa17.21■□□□□ 0.35
SHKBP1-208ENST00000595726 UTYO14607 1347 aa17.21■□□□□ 0.34
SHKBP1-208ENST00000595726 KIF16BQ96L93 1317 aa17.21■□□□□ 0.34
SHKBP1-208ENST00000595726 PHIPQ8WWQ0 1821 aa17.2■□□□□ 0.34
SHKBP1-208ENST00000595726 SLC5A1P13866 664 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms