RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 GIMAP6Q6P9H5 292 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 MAPKAPK5Q8IW41 473 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 IFNL3Q8IZI9 196 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 TGFBRAP1Q8WUH2 860 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 NAPBQ9H115 298 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 TAF1DQ9H5J8 278 aaPredicted RBP12.95□□□□□ -0.34
USE1-204ENST00000594399 VEZTQ9HBM0 779 aa12.95□□□□□ -0.34
USE1-204ENST00000594399 ZNF70Q9UC06 446 aaPredicted RBP12.95□□□□□ -0.34
USE1-204ENST00000594399 U3KPZ7 1027 aaPredicted RBP12.95□□□□□ -0.34
USE1-204ENST00000594399 COL2A1P02458 1487 aaPredicted RBP12.95□□□□□ -0.34
USE1-204ENST00000594399 NPM3O75607 178 aaKnown RBP12.94□□□□□ -0.34
USE1-204ENST00000594399 MCCP23508 829 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 NFIAQ12857 509 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 TNFAIP1Q13829 316 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 ALX1Q15699 326 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 FKBP1CQ5VVH2 108 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 CHADLQ6NUI6 762 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 USP50Q70EL3 339 aaPredicted RBP12.94□□□□□ -0.34
USE1-204ENST00000594399 MAP4K1Q92918 833 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 DCP1AQ9NPI6 582 aaPredicted RBP12.94□□□□□ -0.34
USE1-204ENST00000594399 DDX4Q9NQI0 724 aaKnown RBP12.94□□□□□ -0.34
USE1-204ENST00000594399 GGA3Q9NZ52 723 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 ARPP21Q9UBL0 812 aaPredicted RBP12.94□□□□□ -0.34
USE1-204ENST00000594399 MKRN1Q9UHC7 482 aaKnown RBP12.94□□□□□ -0.34
USE1-204ENST00000594399 CTNNA3Q9UI47 895 aa12.94□□□□□ -0.34
USE1-204ENST00000594399 RBM8AQ9Y5S9 174 aaKnown RBP12.94□□□□□ -0.34
USE1-204ENST00000594399 BAZ2AQ9UIF9 1905 aaKnown RBP12.94□□□□□ -0.34
USE1-204ENST00000594399 ASTN2O75129 1339 aaPredicted RBP12.93□□□□□ -0.34
USE1-204ENST00000594399 TCP10L2B9ZVM9 353 aa12.93□□□□□ -0.34
USE1-204ENST00000594399 ENTPD3O75355 529 aa12.93□□□□□ -0.34
USE1-204ENST00000594399 HIRAP54198 1017 aaPredicted RBP12.93□□□□□ -0.34
USE1-204ENST00000594399 ANGEL2Q5VTE6 544 aaKnown RBP12.93□□□□□ -0.34
USE1-204ENST00000594399 PNMA8AQ86V59 439 aaPredicted RBP12.93□□□□□ -0.34
USE1-204ENST00000594399 LDHDQ86WU2 507 aa12.93□□□□□ -0.34
USE1-204ENST00000594399 APOBEC3FQ8IUX4 373 aaKnown RBP12.93□□□□□ -0.34
USE1-204ENST00000594399 AMOTL1Q8IY63 956 aa12.93□□□□□ -0.34
USE1-204ENST00000594399 OSBPL5Q9H0X9 879 aaPredicted RBP12.93□□□□□ -0.34
USE1-204ENST00000594399 MCM9Q9NXL9 1143 aa12.93□□□□□ -0.34
USE1-204ENST00000594399 MYH1P12882 1939 aa12.93□□□□□ -0.34
USE1-204ENST00000594399 PITPNM2Q9BZ72 1349 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 FGAP02671 866 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 TNNI2P48788 182 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 TCP10Q12799 353 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 FAM83AQ86UY5 434 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 USP26Q9BXU7 913 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 FAM198AQ9UFP1 575 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 SAP30BPQ9UHR5 308 aaKnown RBP12.92□□□□□ -0.34
USE1-204ENST00000594399 CNTNAP1P78357 1384 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 ATRNL1Q5VV63 1379 aa12.92□□□□□ -0.34
USE1-204ENST00000594399 IMMTQ16891 758 aaKnown RBP12.91□□□□□ -0.34
USE1-204ENST00000594399 SBK1Q52WX2 424 aa12.91□□□□□ -0.34
USE1-204ENST00000594399 EAPPQ56P03 285 aaPredicted RBP12.91□□□□□ -0.34
USE1-204ENST00000594399 RNF20Q5VTR2 975 aa12.91□□□□□ -0.34
USE1-204ENST00000594399 CREB3L3Q68CJ9 461 aa12.91□□□□□ -0.34
USE1-204ENST00000594399 CTR9Q6PD62 1173 aa12.91□□□□□ -0.34
USE1-204ENST00000594399 ZC3H15Q8WU90 426 aaKnown RBP12.91□□□□□ -0.34
USE1-204ENST00000594399 ROBO3Q96MS0 1386 aa12.91□□□□□ -0.34
USE1-204ENST00000594399 USP17L12C9JPN9 530 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 USP17L21D6R901 530 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 ZNF213O14771 459 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 SLC27A2O14975 620 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 POLR3DP05423 398 aaPredicted RBP12.9□□□□□ -0.34
USE1-204ENST00000594399 HLA-DOAP06340 250 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 HSPA4P34932 840 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 PPARAQ07869 468 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 NECTIN1Q15223 517 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 SLC4A8Q2Y0W8 1093 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 ZSCAN29Q8IWY8 852 aaPredicted RBP12.9□□□□□ -0.34
USE1-204ENST00000594399 FAM151AQ8WW52 585 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 C22orf23Q9BZE7 217 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 DHX36Q9H2U1 1008 aaKnown RBP12.9□□□□□ -0.34
USE1-204ENST00000594399 PALD1Q9ULE6 856 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 CLEC11AQ9Y240 323 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 PPP2R3BQ9Y5P8 575 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 SIPA1L1O43166 1804 aa12.9□□□□□ -0.34
USE1-204ENST00000594399 CYP2D7A0A087X1C5 515 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 MINDY4BA8MYZ0 360 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 CYP21A2P08686 494 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 POTEIP0CG38 1075 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 POTEJP0CG39 1038 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 CYP2D6P10635 497 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 ZKSCAN1P17029 563 aaPredicted RBP12.89□□□□□ -0.35
USE1-204ENST00000594399 HAND2P61296 217 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 RASA3Q14644 834 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 C12orf60Q5U649 245 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 TTC6Q86TZ1 520 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 SULF1Q8IWU6 871 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 ZFPM1Q8IX07 1006 aa12.89□□□□□ -0.35
USE1-204ENST00000594399 DCPSQ96C86 337 aaKnown RBP12.89□□□□□ -0.35
USE1-204ENST00000594399 DDTLA6NHG4 134 aaPredicted RBP12.88□□□□□ -0.35
USE1-204ENST00000594399 SLC3A2P08195 630 aaKnown RBP12.88□□□□□ -0.35
USE1-204ENST00000594399 RBM25P49756 843 aaKnown RBP12.88□□□□□ -0.35
USE1-204ENST00000594399 SH3BP5LQ7L8J4 393 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 TBC1D10CQ8IV04 446 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 KCNB2Q92953 911 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 TBC1D32Q96NH3 1257 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 CSRNP1Q96S65 589 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 TMEM39BQ9GZU3 492 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 NBPF3Q9H094 633 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 DEFB129Q9H1M3 183 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms