RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 RFX7Q2KHR2 1363 aa18.19■□□□□ 0.5
UPF1-202ENST00000594243 PDE6AP16499 860 aa18.19■□□□□ 0.5
UPF1-202ENST00000594243 MAP3K9P80192 1104 aa18.19■□□□□ 0.5
UPF1-202ENST00000594243 RASAL3Q86YV0 1011 aa18.19■□□□□ 0.5
UPF1-202ENST00000594243 CSRNP1Q96S65 589 aa18.19■□□□□ 0.5
UPF1-202ENST00000594243 ZNF341Q9BYN7 854 aa18.19■□□□□ 0.5
UPF1-202ENST00000594243 ZNF532Q9HCE3 1301 aa18.19■□□□□ 0.5
UPF1-202ENST00000594243 HSPA1AP0DMV8 641 aaKnown RBP18.18■□□□□ 0.5
UPF1-202ENST00000594243 HSPA1BP0DMV9 641 aaKnown RBP18.18■□□□□ 0.5
UPF1-202ENST00000594243 ADD2P35612 726 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 DYNLL1P63167 89 aaKnown RBP18.18■□□□□ 0.5
UPF1-202ENST00000594243 NUCB1Q02818 461 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 TSHZ3Q63HK5 1081 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 MIGA2Q7L4E1 593 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 CHD1LQ86WJ1 897 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 REM2Q8IYK8 340 aaPredicted RBP18.18■□□□□ 0.5
UPF1-202ENST00000594243 MIGA1Q8NAN2 632 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 PI4K2BQ8TCG2 481 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 OTUD7AQ8TE49 926 aaPredicted RBP18.18■□□□□ 0.5
UPF1-202ENST00000594243 TGFBRAP1Q8WUH2 860 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 LNPKQ9C0E8 428 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 OSBPL5Q9H0X9 879 aaPredicted RBP18.18■□□□□ 0.5
UPF1-202ENST00000594243 DOCK2Q92608 1830 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 SALL3Q9BXA9 1300 aa18.18■□□□□ 0.5
UPF1-202ENST00000594243 MAGEB6P1A0A0J9YX57 407 aa18.17■□□□□ 0.5
UPF1-202ENST00000594243 TCRBV5S4A2TA0A5A2 114 aa18.17■□□□□ 0.5
UPF1-202ENST00000594243 DDTLA6NHG4 134 aaPredicted RBP18.17■□□□□ 0.5
UPF1-202ENST00000594243 UBE3CQ15386 1083 aa18.17■□□□□ 0.5
UPF1-202ENST00000594243 LRRFIP1Q32MZ4 808 aaKnown RBP18.17■□□□□ 0.5
UPF1-202ENST00000594243 KBTBD3Q8NAB2 608 aa18.17■□□□□ 0.5
UPF1-202ENST00000594243 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.17■□□□□ 0.5
UPF1-202ENST00000594243 BEGAINQ9BUH8 593 aa18.17■□□□□ 0.5
UPF1-202ENST00000594243 DHX36Q9H2U1 1008 aaKnown RBP18.17■□□□□ 0.5
UPF1-202ENST00000594243 STAP2Q9UGK3 403 aa18.17■□□□□ 0.5
UPF1-202ENST00000594243 CSADQ9Y600 493 aa18.17■□□□□ 0.5
UPF1-202ENST00000594243 MYO5AQ9Y4I1 1855 aaKnown RBP18.16■□□□□ 0.5
UPF1-202ENST00000594243 USP5P45974 858 aa18.16■□□□□ 0.5
UPF1-202ENST00000594243 PDE1AP54750 535 aa18.16■□□□□ 0.5
UPF1-202ENST00000594243 KIF23Q02241 960 aaPredicted RBP18.16■□□□□ 0.5
UPF1-202ENST00000594243 SH3BP5LQ7L8J4 393 aa18.16■□□□□ 0.5
UPF1-202ENST00000594243 AIDAQ96BJ3 306 aa18.16■□□□□ 0.5
UPF1-202ENST00000594243 WRNIP1Q96S55 665 aa18.16■□□□□ 0.5
UPF1-202ENST00000594243 WBP1LQ9NX94 342 aa18.16■□□□□ 0.5
UPF1-202ENST00000594243 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.16■□□□□ 0.5
UPF1-202ENST00000594243 ATRNL1Q5VV63 1379 aa18.16■□□□□ 0.5
UPF1-202ENST00000594243 TBC1D12O60347 775 aa18.15■□□□□ 0.5
UPF1-202ENST00000594243 MAP3K10Q02779 954 aa18.15■□□□□ 0.5
UPF1-202ENST00000594243 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.15■□□□□ 0.5
UPF1-202ENST00000594243 MAPKAPK5Q8IW41 473 aa18.15■□□□□ 0.5
UPF1-202ENST00000594243 CLMNQ96JQ2 1002 aa18.15■□□□□ 0.5
UPF1-202ENST00000594243 RIOK1Q9BRS2 568 aaKnown RBP18.15■□□□□ 0.5
UPF1-202ENST00000594243 ZNF112Q9UJU3 913 aa18.15■□□□□ 0.5
UPF1-202ENST00000594243 COL2A1P02458 1487 aaPredicted RBP18.14■□□□□ 0.5
UPF1-202ENST00000594243 ZFYP08048 801 aaPredicted RBP18.14■□□□□ 0.49
UPF1-202ENST00000594243 ZBTB48P10074 688 aaPredicted RBP18.14■□□□□ 0.49
UPF1-202ENST00000594243 VGLL4Q14135 290 aa18.14■□□□□ 0.49
UPF1-202ENST00000594243 SPRYD7Q5W111 196 aa18.14■□□□□ 0.49
UPF1-202ENST00000594243 ZIC5Q96T25 663 aa18.14■□□□□ 0.49
UPF1-202ENST00000594243 CRNKL1Q9BZJ0 848 aaKnown RBP18.14■□□□□ 0.49
UPF1-202ENST00000594243 ELP3Q9H9T3 547 aa18.14■□□□□ 0.49
UPF1-202ENST00000594243 PI4KBQ9UBF8 816 aa18.14■□□□□ 0.49
UPF1-202ENST00000594243 FLT1P17948 1338 aa18.14■□□□□ 0.49
UPF1-202ENST00000594243 THSD7BQ9C0I4 1608 aa18.13■□□□□ 0.49
UPF1-202ENST00000594243 CENPBP07199 599 aaPredicted RBP18.13■□□□□ 0.49
UPF1-202ENST00000594243 INHBEP58166 350 aa18.13■□□□□ 0.49
UPF1-202ENST00000594243 COL13A1Q5TAT6 717 aaPredicted RBP18.13■□□□□ 0.49
UPF1-202ENST00000594243 WNK4Q96J92 1243 aa18.13■□□□□ 0.49
UPF1-202ENST00000594243 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.13■□□□□ 0.49
UPF1-202ENST00000594243 RNF113AO15541 343 aaKnown RBP18.12■□□□□ 0.49
UPF1-202ENST00000594243 MKRN3Q13064 507 aaKnown RBP18.12■□□□□ 0.49
UPF1-202ENST00000594243 FOXP4Q8IVH2 680 aaPredicted RBP18.12■□□□□ 0.49
UPF1-202ENST00000594243 ZKSCAN4Q969J2 545 aaPredicted RBP18.12■□□□□ 0.49
UPF1-202ENST00000594243 OPTNQ96CV9 577 aa18.12■□□□□ 0.49
UPF1-202ENST00000594243 HERC5Q9UII4 1024 aaKnown RBP18.12■□□□□ 0.49
UPF1-202ENST00000594243 MANSC4A6NHS7 340 aaPredicted RBP18.11■□□□□ 0.49
UPF1-202ENST00000594243 CA12O43570 354 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 HLA-DOAP06340 250 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 INPP5BP32019 993 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 TM4SF4P48230 202 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 SREBF2Q12772 1141 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 ERO1BQ86YB8 467 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 EVI5LQ96CN4 794 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 FSD1Q9BTV5 496 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 OSBPL3Q9H4L5 887 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 PALD1Q9ULE6 856 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 AK9Q5TCS8 1911 aa18.11■□□□□ 0.49
UPF1-202ENST00000594243 PHF20L1A8MW92 1017 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 CTNND1O60716 968 aaKnown RBP18.1■□□□□ 0.49
UPF1-202ENST00000594243 MBD4O95243 580 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 SLFNL1Q499Z3 407 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 NOL9Q5SY16 702 aaKnown RBP18.1■□□□□ 0.49
UPF1-202ENST00000594243 TTC6Q86TZ1 520 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 PLEKHM2Q8IWE5 1019 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 LCORLQ8N3X6 602 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 APPBP2Q92624 585 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 TRIM34Q9BYJ4 488 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 PUS7LQ9H0K6 701 aaKnown RBP18.1■□□□□ 0.49
UPF1-202ENST00000594243 ARMT1Q9H993 441 aa18.1■□□□□ 0.49
UPF1-202ENST00000594243 SAP30BPQ9UHR5 308 aaKnown RBP18.1■□□□□ 0.49
UPF1-202ENST00000594243 SNCAIPQ9Y6H5 919 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms