RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 COL2A1P02458 1487 aaPredicted RBP17.67■□□□□ 0.42
VRK3-206ENST00000594090 ATRNL1Q5VV63 1379 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 UNCXA6NJT0 531 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 IGHDP01880 384 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 PDE6AP16499 860 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 MAP2K1Q02750 393 aaPredicted RBP17.67■□□□□ 0.42
VRK3-206ENST00000594090 SLC9C2Q5TAH2 1124 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 DCAF15Q66K64 600 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 ANKRD13AQ8IZ07 590 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 MIGA1Q8NAN2 632 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 SALL3Q9BXA9 1300 aa17.67■□□□□ 0.42
VRK3-206ENST00000594090 DYNLL1P63167 89 aaKnown RBP17.66■□□□□ 0.42
VRK3-206ENST00000594090 SH3BP5LQ7L8J4 393 aa17.66■□□□□ 0.42
VRK3-206ENST00000594090 ZSCAN29Q8IWY8 852 aaPredicted RBP17.66■□□□□ 0.42
VRK3-206ENST00000594090 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.66■□□□□ 0.42
VRK3-206ENST00000594090 CSRNP1Q96S65 589 aa17.66■□□□□ 0.42
VRK3-206ENST00000594090 WBP1LQ9NX94 342 aa17.66■□□□□ 0.42
VRK3-206ENST00000594090 LAMB1P07942 1786 aa17.66■□□□□ 0.42
VRK3-206ENST00000594090 DDTLA6NHG4 134 aaPredicted RBP17.65■□□□□ 0.42
VRK3-206ENST00000594090 MX1P20591 662 aa17.65■□□□□ 0.42
VRK3-206ENST00000594090 KIF23Q02241 960 aaPredicted RBP17.65■□□□□ 0.42
VRK3-206ENST00000594090 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.65■□□□□ 0.42
VRK3-206ENST00000594090 MIGA2Q7L4E1 593 aa17.65■□□□□ 0.42
VRK3-206ENST00000594090 CERS3Q8IU89 383 aa17.65■□□□□ 0.42
VRK3-206ENST00000594090 PI4K2BQ8TCG2 481 aa17.65■□□□□ 0.42
VRK3-206ENST00000594090 WRNIP1Q96S55 665 aa17.65■□□□□ 0.42
VRK3-206ENST00000594090 ZNF341Q9BYN7 854 aa17.65■□□□□ 0.42
VRK3-206ENST00000594090 OSBPL5Q9H0X9 879 aaPredicted RBP17.65■□□□□ 0.42
VRK3-206ENST00000594090 ZNF532Q9HCE3 1301 aa17.65■□□□□ 0.42
VRK3-206ENST00000594090 TCRBV5S4A2TA0A5A2 114 aa17.64■□□□□ 0.42
VRK3-206ENST00000594090 VGLL4Q14135 290 aa17.64■□□□□ 0.42
VRK3-206ENST00000594090 SLC10A4Q96EP9 437 aa17.64■□□□□ 0.42
VRK3-206ENST00000594090 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.64■□□□□ 0.422e-7■■■□□ 18.9
VRK3-206ENST00000594090 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.64■□□□□ 0.42
VRK3-206ENST00000594090 FLT1P17948 1338 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 ERC2O15083 957 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 GLRX3O76003 335 aaKnown RBP17.64■□□□□ 0.41
VRK3-206ENST00000594090 ADD2P35612 726 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 MAP3K9P80192 1104 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 MKRN3Q13064 507 aaKnown RBP17.64■□□□□ 0.41
VRK3-206ENST00000594090 SPRYD7Q5W111 196 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 B4GALNT3Q6L9W6 998 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 TGFBRAP1Q8WUH2 860 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 AIDAQ96BJ3 306 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 WNK4Q96J92 1243 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 RIOK1Q9BRS2 568 aaKnown RBP17.64■□□□□ 0.41
VRK3-206ENST00000594090 LNPKQ9C0E8 428 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 ELP3Q9H9T3 547 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 CSADQ9Y600 493 aa17.64■□□□□ 0.41
VRK3-206ENST00000594090 SIPA1L1O43166 1804 aa17.63■□□□□ 0.41
VRK3-206ENST00000594090 MAGEB6P1A0A0J9YX57 407 aa17.63■□□□□ 0.41
VRK3-206ENST00000594090 MAPKAPK5Q8IW41 473 aa17.63■□□□□ 0.41
VRK3-206ENST00000594090 DDX60LQ5H9U9 1706 aaKnown RBP17.62■□□□□ 0.41
VRK3-206ENST00000594090 NAV1Q8NEY1 1877 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 FOXN1O15353 648 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 ZBTB48P10074 688 aaPredicted RBP17.62■□□□□ 0.41
VRK3-206ENST00000594090 NUCB1Q02818 461 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 SLFNL1Q499Z3 407 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 CHD1LQ86WJ1 897 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 KBTBD3Q8NAB2 608 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 BEGAINQ9BUH8 593 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 ZNF112Q9UJU3 913 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 SNCAIPQ9Y6H5 919 aa17.62■□□□□ 0.41
VRK3-206ENST00000594090 CHGBP05060 677 aa17.61■□□□□ 0.41
VRK3-206ENST00000594090 INPP5BP32019 993 aa17.61■□□□□ 0.41
VRK3-206ENST00000594090 GJA5P36382 358 aa17.61■□□□□ 0.41
VRK3-206ENST00000594090 MAP3K10Q02779 954 aa17.61■□□□□ 0.41
VRK3-206ENST00000594090 UBE3CQ15386 1083 aa17.61■□□□□ 0.41
VRK3-206ENST00000594090 REM2Q8IYK8 340 aaPredicted RBP17.61■□□□□ 0.41
VRK3-206ENST00000594090 ZKSCAN4Q969J2 545 aaPredicted RBP17.61■□□□□ 0.41
VRK3-206ENST00000594090 OPTNQ96CV9 577 aa17.61■□□□□ 0.41
VRK3-206ENST00000594090 STAP2Q9UGK3 403 aa17.61■□□□□ 0.41
VRK3-206ENST00000594090 MYH1P12882 1939 aa17.6■□□□□ 0.41
VRK3-206ENST00000594090 SLURP2P0DP57 97 aa17.6■□□□□ 0.41
VRK3-206ENST00000594090 USP5P45974 858 aa17.6■□□□□ 0.41
VRK3-206ENST00000594090 PDE1AP54750 535 aa17.6■□□□□ 0.41
VRK3-206ENST00000594090 ZSCAN25Q6NSZ9 544 aa17.6■□□□□ 0.41
VRK3-206ENST00000594090 CNKSR2Q8WXI2 1034 aa17.6■□□□□ 0.41
VRK3-206ENST00000594090 DHX36Q9H2U1 1008 aaKnown RBP17.6■□□□□ 0.41
VRK3-206ENST00000594090 DOCK1Q14185 1865 aa17.6■□□□□ 0.41
VRK3-206ENST00000594090 SPDYE5A6NIY4 337 aa17.59■□□□□ 0.41
VRK3-206ENST00000594090 PHF20L1A8MW92 1017 aa17.59■□□□□ 0.41
VRK3-206ENST00000594090 TBC1D12O60347 775 aa17.59■□□□□ 0.41
VRK3-206ENST00000594090 NOL9Q5SY16 702 aaKnown RBP17.59■□□□□ 0.41
VRK3-206ENST00000594090 LCORLQ8N3X6 602 aa17.59■□□□□ 0.41
VRK3-206ENST00000594090 CRNKL1Q9BZJ0 848 aaKnown RBP17.59■□□□□ 0.41
VRK3-206ENST00000594090 CA12O43570 354 aa17.58■□□□□ 0.41
VRK3-206ENST00000594090 MBD4O95243 580 aa17.58■□□□□ 0.41
VRK3-206ENST00000594090 CTCFP49711 727 aaPredicted RBP17.58■□□□□ 0.41
VRK3-206ENST00000594090 SREBF2Q12772 1141 aa17.58■□□□□ 0.41
VRK3-206ENST00000594090 ERO1BQ86YB8 467 aa17.58■□□□□ 0.41
VRK3-206ENST00000594090 PI4KBQ9UBF8 816 aa17.58■□□□□ 0.41
VRK3-206ENST00000594090 SAP30BPQ9UHR5 308 aaKnown RBP17.58■□□□□ 0.41
VRK3-206ENST00000594090 PALD1Q9ULE6 856 aa17.58■□□□□ 0.41
VRK3-206ENST00000594090 MANSC4A6NHS7 340 aaPredicted RBP17.57■□□□□ 0.4
VRK3-206ENST00000594090 FAM196BA6NMK8 535 aa17.57■□□□□ 0.4
VRK3-206ENST00000594090 HSPA8P11142 646 aaKnown RBP17.57■□□□□ 0.4
VRK3-206ENST00000594090 TM4SF4P48230 202 aa17.57■□□□□ 0.4
VRK3-206ENST00000594090 OTUD5Q96G74 571 aa17.57■□□□□ 0.4
VRK3-206ENST00000594090 ARMT1Q9H993 441 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms