RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 MSNP26038 577 aaKnown RBP22.93■■□□□ 1.26
CLIP3-206ENST00000593074 CCAR1Q8IX12 1150 aaKnown RBP22.93■■□□□ 1.26
CLIP3-206ENST00000593074 SLC12A7Q9Y666 1083 aa22.93■■□□□ 1.26
CLIP3-206ENST00000593074 YEATS4O95619 227 aa22.93■■□□□ 1.26
CLIP3-206ENST00000593074 SERPINB2P05120 415 aa22.93■■□□□ 1.26
CLIP3-206ENST00000593074 MYSM1Q5VVJ2 828 aa22.93■■□□□ 1.26
CLIP3-206ENST00000593074 ZNF384Q8TF68 577 aa22.93■■□□□ 1.26
CLIP3-206ENST00000593074 GOLPH3LQ9H4A5 285 aa22.93■■□□□ 1.26
CLIP3-206ENST00000593074 GJB4Q9NTQ9 266 aa22.93■■□□□ 1.26
CLIP3-206ENST00000593074 ZKSCAN5Q9Y2L8 839 aa22.93■■□□□ 1.26
CLIP3-206ENST00000593074 STK36Q9NRP7 1315 aa22.92■■□□□ 1.26
CLIP3-206ENST00000593074 CCDC69A6NI79 296 aa22.92■■□□□ 1.26
CLIP3-206ENST00000593074 ST5P78524 1137 aa22.92■■□□□ 1.26
CLIP3-206ENST00000593074 SART3Q15020 963 aaKnown RBP22.92■■□□□ 1.26
CLIP3-206ENST00000593074 TXNRD1Q16881 649 aa22.92■■□□□ 1.26
CLIP3-206ENST00000593074 LINC00301Q8NCQ3 95 aa22.92■■□□□ 1.26
CLIP3-206ENST00000593074 SDR42E1Q8WUS8 393 aa22.92■■□□□ 1.26
CLIP3-206ENST00000593074 ALG1Q9BT22 464 aa22.92■■□□□ 1.26
CLIP3-206ENST00000593074 KIF28PB7ZC32 967 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 RANBP6O60518 1105 aaKnown RBP22.91■■□□□ 1.26
CLIP3-206ENST00000593074 ME1P48163 572 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 SNW1Q13573 536 aaKnown RBP22.91■■□□□ 1.26
CLIP3-206ENST00000593074 RPGRQ92834 1020 aaKnown RBP22.91■■□□□ 1.26
CLIP3-206ENST00000593074 BRIP1Q9BX63 1249 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 ANKIB1Q9P2G1 1089 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 LEMD3Q9Y2U8 911 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 ADCY5O95622 1261 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 RCAN1P53805 252 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 RBM6P78332 1123 aaKnown RBP22.91■■□□□ 1.26
CLIP3-206ENST00000593074 CCDC73Q6ZRK6 1079 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 ENGASEQ8NFI3 743 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 MYL10Q9BUA6 226 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 DUOX1Q9NRD9 1551 aa22.91■■□□□ 1.26
CLIP3-206ENST00000593074 UBR3Q6ZT12 1888 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 POLR3DP05423 398 aaPredicted RBP22.9■■□□□ 1.26
CLIP3-206ENST00000593074 FAM160A1Q05DH4 1040 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 RRP12Q5JTH9 1297 aaKnown RBP22.9■■□□□ 1.26
CLIP3-206ENST00000593074 CCDC144CPQ8IYA2 1237 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 PROM2Q8N271 834 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 KCNG4Q8TDN1 519 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 PHKBQ93100 1093 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 AIFM3Q96NN9 605 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 PCDHA7Q9UN72 937 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 IRS2Q9Y4H2 1338 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 BRWD3Q6RI45 1802 aa22.9■■□□□ 1.26
CLIP3-206ENST00000593074 A0A1W2PQ27 194 aa22.89■■□□□ 1.26
CLIP3-206ENST00000593074 A0A1W2PQ64 194 aa22.89■■□□□ 1.26
CLIP3-206ENST00000593074 A0A1W2PQD8 194 aa22.89■■□□□ 1.26
CLIP3-206ENST00000593074 CTAGE5O15320 804 aa22.89■■□□□ 1.26
CLIP3-206ENST00000593074 IARSP41252 1262 aaKnown RBP22.89■■□□□ 1.26
CLIP3-206ENST00000593074 WTAPQ15007 396 aa22.89■■□□□ 1.26
CLIP3-206ENST00000593074 ZNF772Q68DY9 489 aaPredicted RBP22.89■■□□□ 1.26
CLIP3-206ENST00000593074 ADALQ6DHV7 355 aa22.89■■□□□ 1.26
CLIP3-206ENST00000593074 NSUN4Q96CB9 384 aaKnown RBP22.89■■□□□ 1.26
CLIP3-206ENST00000593074 CLIC4Q9Y696 253 aa22.89■■□□□ 1.26
CLIP3-206ENST00000593074 SYNE3Q6ZMZ3 975 aa22.89■■□□□ 1.25
CLIP3-206ENST00000593074 TXNRD3Q86VQ6 643 aa22.89■■□□□ 1.25
CLIP3-206ENST00000593074 TMTC2Q8N394 836 aa22.89■■□□□ 1.25
CLIP3-206ENST00000593074 TOMM22Q9NS69 142 aa22.89■■□□□ 1.25
CLIP3-206ENST00000593074 IFNAR1P17181 557 aa22.88■■□□□ 1.25
CLIP3-206ENST00000593074 CRY2Q49AN0 593 aa22.88■■□□□ 1.25
CLIP3-206ENST00000593074 ANO6Q4KMQ2 910 aa22.88■■□□□ 1.25
CLIP3-206ENST00000593074 KRT40Q6A162 431 aa22.88■■□□□ 1.25
CLIP3-206ENST00000593074 TMED8Q6PL24 325 aaPredicted RBP22.88■■□□□ 1.25
CLIP3-206ENST00000593074 ERICH2A1L162 156 aa22.88■■□□□ 1.25
CLIP3-206ENST00000593074 ZNF500O60304 480 aaPredicted RBP22.88■■□□□ 1.25
CLIP3-206ENST00000593074 FMNL1O95466 1100 aaPredicted RBP22.88■■□□□ 1.25
CLIP3-206ENST00000593074 DYNLL1P63167 89 aaKnown RBP22.88■■□□□ 1.25
CLIP3-206ENST00000593074 CHAF1AQ13111 956 aaPredicted RBP22.88■■□□□ 1.25
CLIP3-206ENST00000593074 SASS6Q6UVJ0 657 aa22.88■■□□□ 1.25
CLIP3-206ENST00000593074 FSIP1Q8NA03 581 aa22.88■■□□□ 1.25
CLIP3-206ENST00000593074 MRPS27Q92552 414 aaKnown RBP22.88■■□□□ 1.25
CLIP3-206ENST00000593074 KIAA1551Q9HCM1 1747 aa22.87■■□□□ 1.25
CLIP3-206ENST00000593074 XDHP47989 1333 aa22.87■■□□□ 1.25
CLIP3-206ENST00000593074 STK38Q15208 465 aa22.87■■□□□ 1.25
CLIP3-206ENST00000593074 RBM17Q96I25 401 aaKnown RBP22.87■■□□□ 1.25
CLIP3-206ENST00000593074 BAZ2AQ9UIF9 1905 aaKnown RBP22.87■■□□□ 1.25
CLIP3-206ENST00000593074 MINDY4BA8MYZ0 360 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 AP5Z1O43299 807 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 PTMAP06454 111 aaKnown RBP22.86■■□□□ 1.25
CLIP3-206ENST00000593074 PCP11498 1178 aaKnown RBP22.86■■□□□ 1.25
CLIP3-206ENST00000593074 MECOMQ03112 1051 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 ESR2Q92731 530 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 ZKSCAN3Q9BRR0 538 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 LAMB1P07942 1786 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 SPTLC2O15270 562 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 KINO60870 393 aaKnown RBP22.86■■□□□ 1.25
CLIP3-206ENST00000593074 CAVIN2O95810 425 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 SSRP1Q08945 709 aaKnown RBP22.86■■□□□ 1.25
CLIP3-206ENST00000593074 SEC23AQ15436 765 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 ANO1Q5XXA6 986 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 FMR1NBQ8N0W7 255 aaPredicted RBP22.86■■□□□ 1.25
CLIP3-206ENST00000593074 CBX8Q9HC52 389 aa22.86■■□□□ 1.25
CLIP3-206ENST00000593074 FGRP09769 529 aa22.85■■□□□ 1.25
CLIP3-206ENST00000593074 U2AF2P26368 475 aaKnown RBP eCLIP22.85■■□□□ 1.25
CLIP3-206ENST00000593074 RTN1Q16799 776 aa22.85■■□□□ 1.25
CLIP3-206ENST00000593074 SPTY2D1Q68D10 685 aaPredicted RBP22.85■■□□□ 1.25
CLIP3-206ENST00000593074 WASF1Q92558 559 aa22.85■■□□□ 1.25
CLIP3-206ENST00000593074 UBAC1Q9BSL1 405 aa22.85■■□□□ 1.25
CLIP3-206ENST00000593074 CCDC88AQ3V6T2 1871 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms