RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 FSD1Q9BTV5 496 aa24.28■■□□□ 1.48
ATG4D-208ENST00000588667 PPP1R12BO60237 982 aaPredicted RBP24.27■■□□□ 1.48
ATG4D-208ENST00000588667 HUNKP57058 714 aa24.27■■□□□ 1.48
ATG4D-208ENST00000588667 TTLL12Q14166 644 aaPredicted RBP24.27■■□□□ 1.48
ATG4D-208ENST00000588667 HHIPL1Q96JK4 782 aa24.27■■□□□ 1.48
ATG4D-208ENST00000588667 SLFNL1Q499Z3 407 aa24.26■■□□□ 1.47
ATG4D-208ENST00000588667 ARMC9Q7Z3E5 817 aa24.26■■□□□ 1.47
ATG4D-208ENST00000588667 ZFPM1Q8IX07 1006 aa24.26■■□□□ 1.47
ATG4D-208ENST00000588667 ATRNL1Q5VV63 1379 aa24.26■■□□□ 1.47
ATG4D-208ENST00000588667 MYH1P12882 1939 aa24.25■■□□□ 1.47
ATG4D-208ENST00000588667 RNF113AO15541 343 aaKnown RBP24.25■■□□□ 1.47
ATG4D-208ENST00000588667 CHGBP05060 677 aa24.25■■□□□ 1.47
ATG4D-208ENST00000588667 TGFBRAP1Q8WUH2 860 aa24.25■■□□□ 1.47
ATG4D-208ENST00000588667 OSBPL5Q9H0X9 879 aaPredicted RBP24.25■■□□□ 1.47
ATG4D-208ENST00000588667 OTOFQ9HC10 1997 aa24.25■■□□□ 1.47
ATG4D-208ENST00000588667 PRKG1Q13976 671 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 MAP3K11Q16584 847 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 DEFB115Q30KQ5 88 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 MOB2Q70IA6 237 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 APPBP2Q92624 585 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 ANGEL1Q9UNK9 670 aaKnown RBP24.24■■□□□ 1.47
ATG4D-208ENST00000588667 NAV1Q8NEY1 1877 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 FLT1P17948 1338 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 C8orf34Q49A92 452 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 BMP2KLQ5H9B9 411 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 SH3BP5LQ7L8J4 393 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 ZSCAN29Q8IWY8 852 aaPredicted RBP24.24■■□□□ 1.47
ATG4D-208ENST00000588667 CSRNP1Q96S65 589 aa24.24■■□□□ 1.47
ATG4D-208ENST00000588667 MKRN1Q9UHC7 482 aaKnown RBP24.24■■□□□ 1.47
ATG4D-208ENST00000588667 DDX60LQ5H9U9 1706 aaKnown RBP24.23■■□□□ 1.47
ATG4D-208ENST00000588667 MBD4O95243 580 aa24.23■■□□□ 1.47
ATG4D-208ENST00000588667 DCAF15Q66K64 600 aa24.23■■□□□ 1.47
ATG4D-208ENST00000588667 TICAM2Q86XR7 235 aa24.23■■□□□ 1.47
ATG4D-208ENST00000588667 MAPKAPK5Q8IW41 473 aa24.23■■□□□ 1.47
ATG4D-208ENST00000588667 LCORLQ8N3X6 602 aa24.23■■□□□ 1.47
ATG4D-208ENST00000588667 CRNKL1Q9BZJ0 848 aaKnown RBP24.23■■□□□ 1.47
ATG4D-208ENST00000588667 FZD1Q9UP38 647 aa24.23■■□□□ 1.47
ATG4D-208ENST00000588667 DDTLA6NHG4 134 aaPredicted RBP24.22■■□□□ 1.47
ATG4D-208ENST00000588667 TRIM6-TRIM34B2RNG4 842 aa24.22■■□□□ 1.47
ATG4D-208ENST00000588667 USP5P45974 858 aa24.22■■□□□ 1.47
ATG4D-208ENST00000588667 IREB2P48200 963 aaKnown RBP24.22■■□□□ 1.47
ATG4D-208ENST00000588667 DNAJC5GQ8N7S2 189 aa24.22■■□□□ 1.47
ATG4D-208ENST00000588667 AIDAQ96BJ3 306 aa24.22■■□□□ 1.47
ATG4D-208ENST00000588667 PUS7LQ9H0K6 701 aaKnown RBP24.22■■□□□ 1.47
ATG4D-208ENST00000588667 UBE2Q2LH0YL09 131 aa24.21■■□□□ 1.47
ATG4D-208ENST00000588667 USP2O75604 605 aaPredicted RBP24.21■■□□□ 1.47
ATG4D-208ENST00000588667 KLRG1Q96E93 195 aa24.21■■□□□ 1.47
ATG4D-208ENST00000588667 ARMT1Q9H993 441 aa24.21■■□□□ 1.47
ATG4D-208ENST00000588667 LDLRAD1Q5T700 205 aa24.21■■□□□ 1.47
ATG4D-208ENST00000588667 RGMBQ6NW40 437 aa24.21■■□□□ 1.47
ATG4D-208ENST00000588667 PAXIP1Q6ZW49 1069 aaPredicted RBP24.21■■□□□ 1.47
ATG4D-208ENST00000588667 OSBP2Q969R2 916 aa24.21■■□□□ 1.47
ATG4D-208ENST00000588667 DHX36Q9H2U1 1008 aaKnown RBP24.21■■□□□ 1.47
ATG4D-208ENST00000588667 SIPA1L1O43166 1804 aa24.2■■□□□ 1.46
ATG4D-208ENST00000588667 UNCXA6NJT0 531 aa24.2■■□□□ 1.46
ATG4D-208ENST00000588667 TTC22Q5TAA0 569 aa24.2■■□□□ 1.46
ATG4D-208ENST00000588667 RILPL2Q969X0 211 aa24.2■■□□□ 1.46
ATG4D-208ENST00000588667 ECE1P42892 770 aa24.19■■□□□ 1.46
ATG4D-208ENST00000588667 ZNF341Q9BYN7 854 aa24.19■■□□□ 1.46
ATG4D-208ENST00000588667 RBM19Q9Y4C8 960 aaKnown RBP24.19■■□□□ 1.46
ATG4D-208ENST00000588667 BAZ2AQ9UIF9 1905 aaKnown RBP24.19■■□□□ 1.46
ATG4D-208ENST00000588667 ZMYM1Q5SVZ6 1142 aa24.18■■□□□ 1.46
ATG4D-208ENST00000588667 CYP4F22Q6NT55 531 aa24.18■■□□□ 1.46
ATG4D-208ENST00000588667 MIGA2Q7L4E1 593 aa24.18■■□□□ 1.46
ATG4D-208ENST00000588667 CAPNS2Q96L46 248 aa24.18■■□□□ 1.46
ATG4D-208ENST00000588667 PCNTO95613 3336 aa24.17■■□□□ 1.46
ATG4D-208ENST00000588667 VEGFBP49765 207 aa24.17■■□□□ 1.46
ATG4D-208ENST00000588667 ZNF157P51786 506 aaPredicted RBP24.17■■□□□ 1.46
ATG4D-208ENST00000588667 ANKRD13AQ8IZ07 590 aa24.17■■□□□ 1.46
ATG4D-208ENST00000588667 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.17■■□□□ 1.461e-19■□□□□ 9.9
ATG4D-208ENST00000588667 SDR42E1Q8WUS8 393 aa24.17■■□□□ 1.46
ATG4D-208ENST00000588667 THSD7BQ9C0I4 1608 aa24.17■■□□□ 1.46
ATG4D-208ENST00000588667 GSPT1P15170 499 aaKnown RBP24.17■■□□□ 1.46
ATG4D-208ENST00000588667 MAP3K10Q02779 954 aa24.17■■□□□ 1.46
ATG4D-208ENST00000588667 STRBPQ96SI9 672 aaKnown RBP24.17■■□□□ 1.46
ATG4D-208ENST00000588667 PI4KBQ9UBF8 816 aa24.17■■□□□ 1.46
ATG4D-208ENST00000588667 SAP30BPQ9UHR5 308 aaKnown RBP24.17■■□□□ 1.46
ATG4D-208ENST00000588667 PALD1Q9ULE6 856 aa24.17■■□□□ 1.46
ATG4D-208ENST00000588667 WDR33Q9C0J8 1336 aaKnown RBP24.16■■□□□ 1.46
ATG4D-208ENST00000588667 M0R2C6 588 aa24.16■■□□□ 1.46
ATG4D-208ENST00000588667 GPAA1O43292 621 aa24.16■■□□□ 1.46
ATG4D-208ENST00000588667 CCDC102AQ96A19 550 aa24.16■■□□□ 1.46
ATG4D-208ENST00000588667 WRNIP1Q96S55 665 aa24.16■■□□□ 1.46
ATG4D-208ENST00000588667 DCP1AQ9NPI6 582 aaPredicted RBP24.16■■□□□ 1.46
ATG4D-208ENST00000588667 ATP8A2Q9NTI2 1148 aa24.16■■□□□ 1.46
ATG4D-208ENST00000588667 PRKAB2O43741 272 aa24.15■■□□□ 1.46
ATG4D-208ENST00000588667 TBC1D12O60347 775 aa24.15■■□□□ 1.46
ATG4D-208ENST00000588667 HLA-DOAP06340 250 aa24.15■■□□□ 1.46
ATG4D-208ENST00000588667 MAP3K9P80192 1104 aa24.15■■□□□ 1.46
ATG4D-208ENST00000588667 SLC4A4Q9Y6R1 1079 aa24.15■■□□□ 1.46
ATG4D-208ENST00000588667 SLC10A3P09131 477 aa24.14■■□□□ 1.46
ATG4D-208ENST00000588667 GRM1Q13255 1194 aa24.14■■□□□ 1.46
ATG4D-208ENST00000588667 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.14■■□□□ 1.46
ATG4D-208ENST00000588667 RASAL3Q86YV0 1011 aa24.14■■□□□ 1.46
ATG4D-208ENST00000588667 CLMNQ96JQ2 1002 aa24.14■■□□□ 1.46
ATG4D-208ENST00000588667 SEC62Q99442 399 aaKnown RBP24.14■■□□□ 1.46
ATG4D-208ENST00000588667 HERC5Q9UII4 1024 aaKnown RBP24.14■■□□□ 1.46
ATG4D-208ENST00000588667 ZNF112Q9UJU3 913 aa24.14■■□□□ 1.46
ATG4D-208ENST00000588667 GNAT2P19087 354 aa24.13■■□□□ 1.45
ATG4D-208ENST00000588667 VGLL4Q14135 290 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms