RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 PDZD3Q86UT5 571 aa6.48□□□□□ -1.37
VPS4B-203ENST00000588323 WFDC3Q8IUB2 231 aa6.48□□□□□ -1.37
VPS4B-203ENST00000588323 VAV3Q9UKW4 847 aa6.48□□□□□ -1.37
VPS4B-203ENST00000588323 SOWAHDA6NJG2 315 aa6.47□□□□□ -1.37
VPS4B-203ENST00000588323 LEFTY1O75610 366 aa6.47□□□□□ -1.37
VPS4B-203ENST00000588323 CD8BP10966 210 aa6.47□□□□□ -1.37
VPS4B-203ENST00000588323 FUT4P22083 530 aa6.47□□□□□ -1.37
VPS4B-203ENST00000588323 ARNTP27540 789 aa6.47□□□□□ -1.37
VPS4B-203ENST00000588323 TMC7Q7Z402 723 aa6.47□□□□□ -1.37
VPS4B-203ENST00000588323 DUSP23Q9BVJ7 150 aa6.47□□□□□ -1.37
VPS4B-203ENST00000588323 EMILIN2Q9BXX0 1053 aa6.47□□□□□ -1.37
VPS4B-203ENST00000588323 BIN2Q9UBW5 565 aaPredicted RBP6.47□□□□□ -1.37
VPS4B-203ENST00000588323 NEFMP07197 916 aa6.46□□□□□ -1.38
VPS4B-203ENST00000588323 C8AP07357 584 aa6.46□□□□□ -1.38
VPS4B-203ENST00000588323 NME2P22392 152 aa6.46□□□□□ -1.38
VPS4B-203ENST00000588323 PRKCQQ04759 706 aa6.46□□□□□ -1.38
VPS4B-203ENST00000588323 IFI16Q16666 785 aaKnown RBP6.46□□□□□ -1.38
VPS4B-203ENST00000588323 MAP1SQ66K74 1059 aaPredicted RBP6.46□□□□□ -1.38
VPS4B-203ENST00000588323 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS4B-203ENST00000588323 STK35Q8TDR2 534 aa6.46□□□□□ -1.38
VPS4B-203ENST00000588323 ACSBG1Q96GR2 724 aa6.46□□□□□ -1.38
VPS4B-203ENST00000588323 RC3H2Q9HBD1 1191 aaKnown RBP6.46□□□□□ -1.38
VPS4B-203ENST00000588323 MKNK2Q9HBH9 465 aa6.46□□□□□ -1.38
VPS4B-203ENST00000588323 DCTN4Q9UJW0 460 aa6.46□□□□□ -1.38
VPS4B-203ENST00000588323 TMEM265A0A087WTH1 108 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 PNMA6FA0A0J9YX94 578 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 CEACAM5P06731 702 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 AOC3Q16853 763 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS4B-203ENST00000588323 ZC3H12AQ5D1E8 599 aaKnown RBP6.45□□□□□ -1.38
VPS4B-203ENST00000588323 NXPE4Q6UWF7 544 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 TOP6BLQ8N6T0 577 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 RNF214Q8ND24 703 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 ISL2Q96A47 359 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 HRASLS5Q96KN8 279 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 CBX8Q9HC52 389 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 U3KQE9 123 aa6.45□□□□□ -1.38
VPS4B-203ENST00000588323 ERVK-24P63145 666 aa6.44□□□□□ -1.38
VPS4B-203ENST00000588323 PLCB3Q01970 1234 aa6.44□□□□□ -1.38
VPS4B-203ENST00000588323 ATG4DQ86TL0 474 aaPredicted RBP6.44□□□□□ -1.38
VPS4B-203ENST00000588323 PI4K2BQ8TCG2 481 aa6.44□□□□□ -1.38
VPS4B-203ENST00000588323 GPBAR1Q8TDU6 330 aa6.44□□□□□ -1.38
VPS4B-203ENST00000588323 SAMM50Q9Y512 469 aa6.44□□□□□ -1.38
VPS4B-203ENST00000588323 RNASE1P07998 156 aaKnown RBP6.43□□□□□ -1.38
VPS4B-203ENST00000588323 ITIH2P19823 946 aa6.43□□□□□ -1.38
VPS4B-203ENST00000588323 CD96P40200 585 aa6.43□□□□□ -1.38
VPS4B-203ENST00000588323 OXCT1P55809 520 aa6.43□□□□□ -1.38
VPS4B-203ENST00000588323 JAG1P78504 1218 aa6.43□□□□□ -1.38
VPS4B-203ENST00000588323 ANGEL2Q5VTE6 544 aaKnown RBP6.43□□□□□ -1.38
VPS4B-203ENST00000588323 PICK1Q9NRD5 415 aa6.43□□□□□ -1.38
VPS4B-203ENST00000588323 MBNL3Q9NUK0 354 aaKnown RBP6.43□□□□□ -1.38
VPS4B-203ENST00000588323 MAPK1P28482 360 aa6.42□□□□□ -1.38
VPS4B-203ENST00000588323 ZNF252P-AS1Q0IIN9 211 aa6.42□□□□□ -1.38
VPS4B-203ENST00000588323 DSC3Q14574 896 aa6.42□□□□□ -1.38
VPS4B-203ENST00000588323 ENOX2Q16206 610 aaKnown RBP6.42□□□□□ -1.38
VPS4B-203ENST00000588323 TPTE2Q6XPS3 522 aa6.42□□□□□ -1.38
VPS4B-203ENST00000588323 NECAB3Q96P71 396 aaPredicted RBP6.42□□□□□ -1.38
VPS4B-203ENST00000588323 ADAMTS6Q9UKP5 1117 aa6.42□□□□□ -1.38
VPS4B-203ENST00000588323 PLAGL2Q9UPG8 496 aa6.42□□□□□ -1.38
VPS4B-203ENST00000588323 CARMIL2Q6F5E8 1435 aa6.42□□□□□ -1.38
VPS4B-203ENST00000588323 TREHO43280 583 aa6.41□□□□□ -1.38
VPS4B-203ENST00000588323 GSTT1P30711 240 aa6.41□□□□□ -1.38
VPS4B-203ENST00000588323 LRRN4CLQ8ND94 238 aa6.41□□□□□ -1.38
VPS4B-203ENST00000588323 C3orf58Q8NDZ4 430 aa6.41□□□□□ -1.38
VPS4B-203ENST00000588323 FAM168AQ92567 244 aa6.41□□□□□ -1.38
VPS4B-203ENST00000588323 CEP44Q9C0F1 390 aa6.41□□□□□ -1.38
VPS4B-203ENST00000588323 GTF2IRD1Q9UHL9 959 aa6.41□□□□□ -1.38
VPS4B-203ENST00000588323 GNEQ9Y223 722 aaKnown RBP6.41□□□□□ -1.38
VPS4B-203ENST00000588323 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.41□□□□□ -1.38
VPS4B-203ENST00000588323 PPM1JQ5JR12 505 aa6.4□□□□□ -1.38
VPS4B-203ENST00000588323 ZNF648Q5T619 568 aaPredicted RBP6.4□□□□□ -1.38
VPS4B-203ENST00000588323 MPRIPQ6WCQ1 1025 aa6.4□□□□□ -1.38
VPS4B-203ENST00000588323 HEXIM2Q96MH2 286 aaKnown RBP6.4□□□□□ -1.38
VPS4B-203ENST00000588323 SRCIN1Q9C0H9 1055 aa6.4□□□□□ -1.38
VPS4B-203ENST00000588323 TNKS2Q9H2K2 1166 aa6.4□□□□□ -1.38
VPS4B-203ENST00000588323 PRDM10Q9NQV6 1147 aa6.4□□□□□ -1.38
VPS4B-203ENST00000588323 SNX11Q9Y5W9 270 aa6.4□□□□□ -1.38
VPS4B-203ENST00000588323 CSADQ9Y600 493 aa6.4□□□□□ -1.38
VPS4B-203ENST00000588323 DCDC2CA8MYV0 355 aa6.39□□□□□ -1.39
VPS4B-203ENST00000588323 TRIM37O94972 964 aa6.39□□□□□ -1.39
VPS4B-203ENST00000588323 SLC23A3Q6PIS1 610 aa6.39□□□□□ -1.39
VPS4B-203ENST00000588323 CDC37L1Q7L3B6 337 aa6.39□□□□□ -1.39
VPS4B-203ENST00000588323 GRIN3AQ8TCU5 1115 aa6.39□□□□□ -1.39
VPS4B-203ENST00000588323 FBF1Q8TES7 1133 aa6.39□□□□□ -1.39
VPS4B-203ENST00000588323 CACNA2D2Q9NY47 1150 aa6.39□□□□□ -1.39
VPS4B-203ENST00000588323 PPM1HQ9ULR3 514 aa6.39□□□□□ -1.39
VPS4B-203ENST00000588323 SUPT5HO00267 1087 aaKnown RBP6.38□□□□□ -1.39
VPS4B-203ENST00000588323 IGF2BP3O00425 579 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS4B-203ENST00000588323 ENC1O14682 589 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 FARP2O94887 1054 aaPredicted RBP6.38□□□□□ -1.39
VPS4B-203ENST00000588323 BMP6P22004 513 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 MAPK8P45983 427 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 IKZF1Q13422 519 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 LRRC14Q15048 493 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 LLGL2Q6P1M3 1020 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 C12orf40Q86WS4 652 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 ASB11Q8WXH4 323 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 PCDHA4Q9UN74 947 aa6.38□□□□□ -1.39
VPS4B-203ENST00000588323 GNAT3A8MTJ3 354 aa6.37□□□□□ -1.39
VPS4B-203ENST00000588323 FANCGO15287 622 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms