RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 VPS37DQ86XT2 251 aa9.72□□□□□ -0.85
COPS3-215ENST00000578317 TDRD7Q8NHU6 1098 aaKnown RBP9.72□□□□□ -0.85
COPS3-215ENST00000578317 EVI5LQ96CN4 794 aa9.72□□□□□ -0.85
COPS3-215ENST00000578317 COA1Q9GZY4 146 aa9.72□□□□□ -0.85
COPS3-215ENST00000578317 CD209Q9NNX6 404 aa9.72□□□□□ -0.85
COPS3-215ENST00000578317 LTBP3Q9NS15 1303 aa9.72□□□□□ -0.85
COPS3-215ENST00000578317 KDM4AO75164 1064 aa9.71□□□□□ -0.85
COPS3-215ENST00000578317 AP1G2O75843 785 aa9.71□□□□□ -0.85
COPS3-215ENST00000578317 MCAMP43121 646 aa9.71□□□□□ -0.85
COPS3-215ENST00000578317 KIAA2012Q0VF49 1180 aa9.71□□□□□ -0.85
COPS3-215ENST00000578317 PRPF38BQ5VTL8 546 aaKnown RBP9.71□□□□□ -0.85
COPS3-215ENST00000578317 PODNQ7Z5L7 613 aa9.71□□□□□ -0.85
COPS3-215ENST00000578317 HMG20BQ9P0W2 317 aa9.71□□□□□ -0.85
COPS3-215ENST00000578317 DENND2AQ9ULE3 1009 aa9.71□□□□□ -0.85
COPS3-215ENST00000578317 BCS1LQ9Y276 419 aa9.71□□□□□ -0.85
COPS3-215ENST00000578317 USP46P62068 366 aa9.71□□□□□ -0.86
COPS3-215ENST00000578317 RASGRF1Q13972 1273 aa9.71□□□□□ -0.86
COPS3-215ENST00000578317 SCARF1Q14162 830 aa9.71□□□□□ -0.86
COPS3-215ENST00000578317 TTF1Q15361 905 aaPredicted RBP9.71□□□□□ -0.86
COPS3-215ENST00000578317 CNTROBQ8N137 903 aa9.71□□□□□ -0.86
COPS3-215ENST00000578317 SPATA5Q8NB90 893 aa9.71□□□□□ -0.86
COPS3-215ENST00000578317 CYP2E1P05181 493 aaPredicted RBP9.7□□□□□ -0.86
COPS3-215ENST00000578317 ZAP70P43403 619 aa9.7□□□□□ -0.86
COPS3-215ENST00000578317 TMED8Q6PL24 325 aaPredicted RBP9.7□□□□□ -0.86
COPS3-215ENST00000578317 KBTBD3Q8NAB2 608 aa9.7□□□□□ -0.86
COPS3-215ENST00000578317 PAG1Q9NWQ8 432 aa9.7□□□□□ -0.86
COPS3-215ENST00000578317 FAM205AQ6ZU69 1335 aa9.69□□□□□ -0.86
COPS3-215ENST00000578317 LRRC37AA6NMS7 1700 aa9.69□□□□□ -0.86
COPS3-215ENST00000578317 NFKBIEO00221 500 aa9.69□□□□□ -0.86
COPS3-215ENST00000578317 ABL2P42684 1182 aa9.69□□□□□ -0.86
COPS3-215ENST00000578317 LRRFIP1Q32MZ4 808 aaKnown RBP9.69□□□□□ -0.86
COPS3-215ENST00000578317 WDR66Q8TBY9 1149 aa9.69□□□□□ -0.86
COPS3-215ENST00000578317 GPR101Q96P66 508 aaPredicted RBP9.69□□□□□ -0.86
COPS3-215ENST00000578317 TAOK3Q9H2K8 898 aa9.69□□□□□ -0.86
COPS3-215ENST00000578317 DLEC1Q9Y238 1755 aa9.69□□□□□ -0.86
COPS3-215ENST00000578317 SALL1Q9NSC2 1324 aa9.69□□□□□ -0.86
COPS3-215ENST00000578317 BRCA1P38398 1863 aaKnown RBP9.68□□□□□ -0.86
COPS3-215ENST00000578317 HIP1O00291 1037 aa9.68□□□□□ -0.86
COPS3-215ENST00000578317 GOLIM4O00461 696 aa9.68□□□□□ -0.86
COPS3-215ENST00000578317 EIF5BO60841 1220 aaKnown RBP9.68□□□□□ -0.86
COPS3-215ENST00000578317 FRAT2O75474 233 aaPredicted RBP9.68□□□□□ -0.86
COPS3-215ENST00000578317 USP17L8P0C7I0 530 aa9.68□□□□□ -0.86
COPS3-215ENST00000578317 FKBP1AP62942 108 aaKnown RBP9.68□□□□□ -0.86
COPS3-215ENST00000578317 ZGPATQ8N5A5 531 aaKnown RBP9.68□□□□□ -0.86
COPS3-215ENST00000578317 RILPL2Q969X0 211 aa9.68□□□□□ -0.86
COPS3-215ENST00000578317 DNAJC2Q99543 621 aaKnown RBP9.68□□□□□ -0.86
COPS3-215ENST00000578317 SUGT1Q9Y2Z0 365 aa9.68□□□□□ -0.86
COPS3-215ENST00000578317 SLX4Q8IY92 1834 aa9.68□□□□□ -0.86
COPS3-215ENST00000578317 TAF1P21675 1872 aa9.68□□□□□ -0.86
COPS3-215ENST00000578317 PPIP5K2O43314 1243 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 CDC45O75419 566 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 ZFYP08048 801 aaPredicted RBP9.67□□□□□ -0.86
COPS3-215ENST00000578317 GCGRP47871 477 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 STRIP1Q5VSL9 837 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 PI16Q6UXB8 463 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 SLF2Q8IX21 1173 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 TBC1D22AQ8WUA7 517 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 ANTXR1Q9H6X2 564 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 DUOX1Q9NRD9 1551 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 RFX7Q2KHR2 1363 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 LTBP1Q14766 1721 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 HOXA2O43364 376 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 MAP4K4O95819 1239 aaPredicted RBP9.67□□□□□ -0.86
COPS3-215ENST00000578317 CHMLP26374 656 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 IARSP41252 1262 aaKnown RBP9.67□□□□□ -0.86
COPS3-215ENST00000578317 MAP3K12Q12852 859 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 AOC3Q16853 763 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 SPTY2D1Q68D10 685 aaPredicted RBP9.67□□□□□ -0.86
COPS3-215ENST00000578317 TTLL5Q6EMB2 1281 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 ZSCAN25Q6NSZ9 544 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 LARGE2Q8N3Y3 721 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 EDC3Q96F86 508 aaKnown RBP9.67□□□□□ -0.86
COPS3-215ENST00000578317 LRCH3Q96II8 777 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.67□□□□□ -0.86
COPS3-215ENST00000578317 ZNF277Q9NRM2 450 aaPredicted RBP9.67□□□□□ -0.86
COPS3-215ENST00000578317 WWC3Q9ULE0 1092 aa9.67□□□□□ -0.86
COPS3-215ENST00000578317 ECE2O60344 883 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 UBE3CQ15386 1083 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 C8orf34Q49A92 452 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 CASC1Q6TDU7 716 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 TBC1D9Q6ZT07 1266 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 CALR3Q96L12 384 aaKnown RBP9.66□□□□□ -0.86
COPS3-215ENST00000578317 FSD1Q9BTV5 496 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 TRAIPQ9BWF2 469 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 MRIQ9BWK5 157 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 BACH2Q9BYV9 841 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 PIH1D3Q9NQM4 214 aaKnown RBP9.66□□□□□ -0.86
COPS3-215ENST00000578317 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.66□□□□□ -0.86
COPS3-215ENST00000578317 ZNRF3Q9ULT6 936 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 IQSEC3Q9UPP2 1182 aaPredicted RBP9.66□□□□□ -0.86
COPS3-215ENST00000578317 NDUFB9Q9Y6M9 179 aa9.66□□□□□ -0.86
COPS3-215ENST00000578317 USP17L3A6NCW0 530 aa9.65□□□□□ -0.86
COPS3-215ENST00000578317 USP17L4A6NCW7 530 aa9.65□□□□□ -0.86
COPS3-215ENST00000578317 SOWAHBA6NEL2 793 aa9.65□□□□□ -0.86
COPS3-215ENST00000578317 RNF113AO15541 343 aaKnown RBP9.65□□□□□ -0.86
COPS3-215ENST00000578317 GRIN3BO60391 1043 aa9.65□□□□□ -0.86
COPS3-215ENST00000578317 RNF40O75150 1001 aa9.65□□□□□ -0.86
COPS3-215ENST00000578317 FDX1P10109 184 aa9.65□□□□□ -0.86
COPS3-215ENST00000578317 GTF2IP78347 998 aa9.65□□□□□ -0.86
COPS3-215ENST00000578317 ARHGAP27Q6ZUM4 889 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms