RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 ERVK-24P63145 666 aa9.12□□□□□ -0.95
SMCHD1-202ENST00000577300 CDK5R2Q13319 367 aa9.12□□□□□ -0.95
SMCHD1-202ENST00000577300 AGBL5Q8NDL9 886 aa9.12□□□□□ -0.95
SMCHD1-202ENST00000577300 FLCNQ8NFG4 579 aa9.12□□□□□ -0.95
SMCHD1-202ENST00000577300 CEP44Q9C0F1 390 aa9.12□□□□□ -0.95
SMCHD1-202ENST00000577300 RNGTTO60942 597 aaKnown RBP9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 FAM87AP0C7U9 286 aa9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 HCLS1P14317 486 aaPredicted RBP9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 MAP1SQ66K74 1059 aaPredicted RBP9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 KRTAP19-1Q8IUB9 90 aa9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 RNF214Q8ND24 703 aa9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 GPBAR1Q8TDU6 330 aa9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 OSBPL7Q9BZF2 842 aa9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 PAK6Q9NQU5 681 aaPredicted RBP9.11□□□□□ -0.95
SMCHD1-202ENST00000577300 ENC1O14682 589 aa9.1□□□□□ -0.95
SMCHD1-202ENST00000577300 NEFMP07197 916 aa9.1□□□□□ -0.95
SMCHD1-202ENST00000577300 BMP6P22004 513 aa9.1□□□□□ -0.95
SMCHD1-202ENST00000577300 STK11IPQ8N1F8 1099 aa9.1□□□□□ -0.95
SMCHD1-202ENST00000577300 RNF114Q9Y508 228 aa9.1□□□□□ -0.95
SMCHD1-202ENST00000577300 SAMM50Q9Y512 469 aa9.1□□□□□ -0.95
SMCHD1-202ENST00000577300 COL19A1Q14993 1142 aa9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 TPTE2Q6XPS3 522 aa9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 KRTAP1-3Q8IUG1 177 aa9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 BCL7CQ8WUZ0 217 aaPredicted RBP9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 ISL2Q96A47 359 aa9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 MISP3Q96FF7 219 aa9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 SETDB2Q96T68 719 aa9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 CBX8Q9HC52 389 aa9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 SLC5A6Q9Y289 635 aa9.09□□□□□ -0.95
SMCHD1-202ENST00000577300 TRIM37O94972 964 aa9.08□□□□□ -0.96
SMCHD1-202ENST00000577300 ATP2B2Q01814 1243 aa9.08□□□□□ -0.96
SMCHD1-202ENST00000577300 LCE3BQ5TA77 95 aa9.08□□□□□ -0.96
SMCHD1-202ENST00000577300 SCARA3Q6AZY7 606 aa9.08□□□□□ -0.96
SMCHD1-202ENST00000577300 NETO1Q8TDF5 533 aa9.08□□□□□ -0.96
SMCHD1-202ENST00000577300 ACSBG1Q96GR2 724 aa9.08□□□□□ -0.96
SMCHD1-202ENST00000577300 MKNK2Q9HBH9 465 aa9.08□□□□□ -0.96
SMCHD1-202ENST00000577300 WWC3Q9ULE0 1092 aa9.08□□□□□ -0.96
SMCHD1-202ENST00000577300 WFDC3Q8IUB2 231 aa9.07□□□□□ -0.96
SMCHD1-202ENST00000577300 DUSP23Q9BVJ7 150 aa9.07□□□□□ -0.96
SMCHD1-202ENST00000577300 SPG7Q9UQ90 795 aa9.07□□□□□ -0.96
SMCHD1-202ENST00000577300 PAGE1O75459 146 aa9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 LRRC14Q15048 493 aa9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 MPRIPQ6WCQ1 1025 aa9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 GRIN3AQ8TCU5 1115 aa9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 TRAIPQ9BWF2 469 aa9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 C12orf49Q9H741 205 aa9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 SSU72Q9NP77 194 aaKnown RBP9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 FAM8A1Q9UBU6 413 aa9.06□□□□□ -0.96
SMCHD1-202ENST00000577300 LEFTY1O75610 366 aa9.05□□□□□ -0.96
SMCHD1-202ENST00000577300 PLD6Q8N2A8 252 aaKnown RBP9.05□□□□□ -0.96
SMCHD1-202ENST00000577300 PATL2C9JE40 543 aaKnown RBP9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 FBXO24O75426 580 aa9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 ITGB5P18084 799 aa9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 RING1Q06587 406 aa9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 LLGL2Q6P1M3 1020 aa9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 SPRED2Q7Z698 418 aa9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 FAM181AQ8N9Y4 354 aa9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 FRMD6Q96NE9 622 aa9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 CYP8B1Q9UNU6 501 aa9.04□□□□□ -0.96
SMCHD1-202ENST00000577300 P4HBP07237 508 aaKnown RBP9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 JUNBP17275 347 aaPredicted RBP9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 NTF4P34130 210 aa9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 OXCT1P55809 520 aa9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 PPM1JQ5JR12 505 aa9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 ZNF574Q6ZN55 896 aaPredicted RBP9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 TOP6BLQ8N6T0 577 aa9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 VAV3Q9UKW4 847 aa9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 U3KQE9 123 aa9.03□□□□□ -0.96
SMCHD1-202ENST00000577300 FANCGO15287 622 aa9.02□□□□□ -0.97
SMCHD1-202ENST00000577300 PRKCQQ04759 706 aa9.02□□□□□ -0.97
SMCHD1-202ENST00000577300 IFI16Q16666 785 aaKnown RBP9.02□□□□□ -0.97
SMCHD1-202ENST00000577300 RASIP1Q5U651 963 aa9.02□□□□□ -0.97
SMCHD1-202ENST00000577300 CEACAM5P06731 702 aa9.01□□□□□ -0.97
SMCHD1-202ENST00000577300 USP17L7P0C7H9 530 aa9.01□□□□□ -0.97
SMCHD1-202ENST00000577300 BNIP3Q12983 259 aa9.01□□□□□ -0.97
SMCHD1-202ENST00000577300 PLCL1Q15111 1095 aa9.01□□□□□ -0.97
SMCHD1-202ENST00000577300 PCNX4Q63HM2 1172 aa9.01□□□□□ -0.97
SMCHD1-202ENST00000577300 ASIC4Q96FT7 647 aa9.01□□□□□ -0.97
SMCHD1-202ENST00000577300 CSADQ9Y600 493 aa9.01□□□□□ -0.97
SMCHD1-202ENST00000577300 DCDC2CA8MYV0 355 aa9□□□□□ -0.97
SMCHD1-202ENST00000577300 LDHBP07195 334 aaKnown RBP9□□□□□ -0.97
SMCHD1-202ENST00000577300 CELA3AP09093 270 aa9□□□□□ -0.97
SMCHD1-202ENST00000577300 ZBTB37Q5TC79 503 aa9□□□□□ -0.97
SMCHD1-202ENST00000577300 ARHGAP27Q6ZUM4 889 aa9□□□□□ -0.97
SMCHD1-202ENST00000577300 FAM214BQ7L5A3 538 aa9□□□□□ -0.97
SMCHD1-202ENST00000577300 C12orf40Q86WS4 652 aa9□□□□□ -0.97
SMCHD1-202ENST00000577300 PCDHA4Q9UN74 947 aa9□□□□□ -0.97
SMCHD1-202ENST00000577300 TMEM265A0A087WTH1 108 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 CD8BP10966 210 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 FUT4P22083 530 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 ZNF792Q3KQV3 632 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 SV2BQ7L1I2 683 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 KCT2Q8NC54 265 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 HEXIM2Q96MH2 286 aaKnown RBP8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 TNKS2Q9H2K2 1166 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 PRDM10Q9NQV6 1147 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 PICK1Q9NRD5 415 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 PLAGL2Q9UPG8 496 aa8.99□□□□□ -0.97
SMCHD1-202ENST00000577300 IGF2BP3O00425 579 aaKnown RBP eCLIP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms