RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LEMD3Q9Y2U8 911 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 MSRB2Q9Y3D2 182 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 LRRIQ1Q96JM4 1722 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 C10orf71Q711Q0 1435 aa7.69□□□□□ -1.18
VPS53-219ENST00000576019 SZT2Q5T011 3432 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 POTECB2RU33 542 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 EREGO14944 169 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 RGS20O76081 388 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 MASP1P48740 699 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 CLN3Q13286 438 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 SQSTM1Q13501 440 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 TKFCQ3LXA3 575 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 XKR5Q6UX68 686 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 FERMT3Q86UX7 667 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 GALNT12Q8IXK2 581 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 C3orf58Q8NDZ4 430 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 EMID1Q96A84 441 aaPredicted RBP7.68□□□□□ -1.18
VPS53-219ENST00000576019 SGSM3Q96HU1 749 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 RHOVQ96L33 236 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 NT5C1AQ9BXI3 368 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 NIFKQ9BYG3 293 aaKnown RBP7.68□□□□□ -1.18
VPS53-219ENST00000576019 ELP3Q9H9T3 547 aa7.68□□□□□ -1.18
VPS53-219ENST00000576019 TYW1Q9NV66 732 aaKnown RBP7.68□□□□□ -1.18
VPS53-219ENST00000576019 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.68□□□□□ -1.18
VPS53-219ENST00000576019 ADAMTS7Q9UKP4 1686 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 MEN1O00255 615 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 NR3C2P08235 984 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 APOBRQ0VD83 1088 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 COL9A2Q14055 689 aaPredicted RBP7.67□□□□□ -1.18
VPS53-219ENST00000576019 PDE12Q6L8Q7 609 aaKnown RBP7.67□□□□□ -1.18
VPS53-219ENST00000576019 C16orf86Q6ZW13 317 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 PPARGC1BQ86YN6 1023 aaKnown RBP7.67□□□□□ -1.18
VPS53-219ENST00000576019 C16orf71Q8IYS4 520 aaPredicted RBP7.67□□□□□ -1.18
VPS53-219ENST00000576019 CMTR1Q8N1G2 835 aaKnown RBP7.67□□□□□ -1.18
VPS53-219ENST00000576019 PGBD3Q8N328 593 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 FAM169BQ8N8A8 192 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 AIDAQ96BJ3 306 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 SHDQ96IW2 340 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 HSH2DQ96JZ2 352 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 FEZ1Q99689 392 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 CCDC113Q9H0I3 377 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 CHRDQ9H2X0 955 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 TMEM260Q9NX78 707 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 PGPEP1Q9NXJ5 209 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 PPT2Q9UMR5 302 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 TLR6Q9Y2C9 796 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 SUPT16HQ9Y5B9 1047 aaKnown RBP7.67□□□□□ -1.18
VPS53-219ENST00000576019 RRBP1Q9P2E9 1410 aaKnown RBP7.67□□□□□ -1.18
VPS53-219ENST00000576019 RIMS2Q9UQ26 1411 aa7.67□□□□□ -1.18
VPS53-219ENST00000576019 ADH1CP00326 375 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 ADH1AP07327 375 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 CRKP46108 304 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 FXR1P51114 621 aaKnown RBP eCLIP7.66□□□□□ -1.18
VPS53-219ENST00000576019 FCGRTP55899 365 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 EVA1CP58658 441 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 DDR2Q16832 855 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 TNNI3KQ59H18 835 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 TAF7LQ5H9L4 462 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 ZNF280CQ8ND82 737 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 GLIS3Q8NEA6 775 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 CCDC136Q96JN2 1154 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 TMX1Q9H3N1 280 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 CNTN3Q9P232 1028 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 MAPK8IP1Q9UQF2 711 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 FNDC3AQ9Y2H6 1198 aaKnown RBP7.66□□□□□ -1.18
VPS53-219ENST00000576019 PXDNLA1KZ92 1463 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 CICQ96RK0 1608 aaPredicted RBP7.66□□□□□ -1.18
VPS53-219ENST00000576019 EIF2AK4Q9P2K8 1649 aaKnown RBP7.66□□□□□ -1.18
VPS53-219ENST00000576019 TOPAZ1Q8N9V7 1692 aa7.66□□□□□ -1.18
VPS53-219ENST00000576019 PDPK1O15530 556 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 HSPA8P11142 646 aaKnown RBP7.65□□□□□ -1.18
VPS53-219ENST00000576019 GARTP22102 1010 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 PLA2G4AP47712 749 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 SEPT6Q14141 434 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 SNAP47Q5SQN1 464 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 SPATA31A3Q5VYP0 1347 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 TMEM214Q6NUQ4 689 aaKnown RBP7.65□□□□□ -1.18
VPS53-219ENST00000576019 TICAM2Q86XR7 235 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 CCAR1Q8IX12 1150 aaKnown RBP7.65□□□□□ -1.18
VPS53-219ENST00000576019 C1orf127Q8N9H9 656 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 KDF1Q8NAX2 398 aaPredicted RBP7.65□□□□□ -1.18
VPS53-219ENST00000576019 PHC3Q8NDX5 983 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 SUSD3Q96L08 255 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 CEP89Q96ST8 783 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 ZSCAN10Q96SZ4 725 aaPredicted RBP7.65□□□□□ -1.18
VPS53-219ENST00000576019 EHD4Q9H223 541 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 HOMER2Q9NSB8 354 aa7.65□□□□□ -1.18
VPS53-219ENST00000576019 THRAP3Q9Y2W1 955 aaKnown RBP7.65□□□□□ -1.18
VPS53-219ENST00000576019 RTCBQ9Y3I0 505 aaKnown RBP7.65□□□□□ -1.18
VPS53-219ENST00000576019 COL6A3P12111 3177 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 DUOX2Q9NRD8 1548 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 PRC1O43663 620 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 PF4P02776 101 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 POLD1P28340 1107 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 ARSDP51689 593 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 CTC1Q2NKJ3 1217 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 PLA2G2CQ5R387 149 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 RAVER1Q8IY67 606 aaKnown RBP7.64□□□□□ -1.19
VPS53-219ENST00000576019 GOLM1Q8NBJ4 401 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 SMC1BQ8NDV3 1235 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms