RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 AATFQ9NY61 560 aaKnown RBP eCLIP16.49■□□□□ 0.23
CIITA-210ENST00000575513 ZNF112Q9UJU3 913 aa16.49■□□□□ 0.23
CIITA-210ENST00000575513 NDUFB9Q9Y6M9 179 aa16.49■□□□□ 0.23
CIITA-210ENST00000575513 ATRNL1Q5VV63 1379 aa16.49■□□□□ 0.23
CIITA-210ENST00000575513 GOLIM4O00461 696 aa16.48■□□□□ 0.23
CIITA-210ENST00000575513 TBC1D12O60347 775 aa16.48■□□□□ 0.23
CIITA-210ENST00000575513 TEX11Q8IYF3 940 aa16.48■□□□□ 0.23
CIITA-210ENST00000575513 CLMNQ96JQ2 1002 aa16.48■□□□□ 0.23
CIITA-210ENST00000575513 DNAJC2Q99543 621 aaKnown RBP16.48■□□□□ 0.23
CIITA-210ENST00000575513 BCL11AQ9H165 835 aa16.48■□□□□ 0.23
CIITA-210ENST00000575513 DHX36Q9H2U1 1008 aaKnown RBP16.48■□□□□ 0.23
CIITA-210ENST00000575513 ZBTB47Q9UFB7 747 aaPredicted RBP16.48■□□□□ 0.23
CIITA-210ENST00000575513 CSADQ9Y600 493 aa16.48■□□□□ 0.23
CIITA-210ENST00000575513 COL2A1P02458 1487 aaPredicted RBP16.48■□□□□ 0.23
CIITA-210ENST00000575513 TTC41PQ6P2S7 1318 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 MANSC4A6NHS7 340 aaPredicted RBP16.47■□□□□ 0.23
CIITA-210ENST00000575513 SREBF2Q12772 1141 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 PICALMQ13492 652 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 VGLL4Q14135 290 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 SLC9C2Q5TAH2 1124 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 MIGA2Q7L4E1 593 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 SH3BP5LQ7L8J4 393 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 ZSCAN29Q8IWY8 852 aaPredicted RBP16.47■□□□□ 0.23
CIITA-210ENST00000575513 SH3RF3Q8TEJ3 882 aaPredicted RBP16.47■□□□□ 0.23
CIITA-210ENST00000575513 WNK4Q96J92 1243 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 WRNIP1Q96S55 665 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.47■□□□□ 0.23
CIITA-210ENST00000575513 OSBPL5Q9H0X9 879 aaPredicted RBP16.47■□□□□ 0.23
CIITA-210ENST00000575513 PRDM10Q9NQV6 1147 aa16.47■□□□□ 0.23
CIITA-210ENST00000575513 DDTLA6NHG4 134 aaPredicted RBP16.46■□□□□ 0.23
CIITA-210ENST00000575513 ERC2O15083 957 aa16.46■□□□□ 0.23
CIITA-210ENST00000575513 CENPBP07199 599 aaPredicted RBP16.46■□□□□ 0.23
CIITA-210ENST00000575513 PDE6AP16499 860 aa16.46■□□□□ 0.23
CIITA-210ENST00000575513 SMC5Q8IY18 1101 aa16.46■□□□□ 0.23
CIITA-210ENST00000575513 TCRBV5S4A2TA0A5A2 114 aa16.45■□□□□ 0.22
CIITA-210ENST00000575513 NOL9Q5SY16 702 aaKnown RBP16.45■□□□□ 0.22
CIITA-210ENST00000575513 ANKRD45Q5TZF3 282 aa16.45■□□□□ 0.22
CIITA-210ENST00000575513 ZSCAN25Q6NSZ9 544 aa16.45■□□□□ 0.22
CIITA-210ENST00000575513 ERO1BQ86YB8 467 aa16.45■□□□□ 0.22
CIITA-210ENST00000575513 TGFBRAP1Q8WUH2 860 aa16.45■□□□□ 0.22
CIITA-210ENST00000575513 ELP3Q9H9T3 547 aa16.45■□□□□ 0.22
CIITA-210ENST00000575513 MAST2Q6P0Q8 1798 aa16.44■□□□□ 0.22
CIITA-210ENST00000575513 TESPA1A2RU30 521 aaPredicted RBP16.44■□□□□ 0.22
CIITA-210ENST00000575513 SPDYE5A6NIY4 337 aa16.44■□□□□ 0.22
CIITA-210ENST00000575513 PHF20L1A8MW92 1017 aa16.44■□□□□ 0.22
CIITA-210ENST00000575513 GLRX3O76003 335 aaKnown RBP16.44■□□□□ 0.22
CIITA-210ENST00000575513 HSPA8P11142 646 aaKnown RBP16.44■□□□□ 0.22
CIITA-210ENST00000575513 UBE3CQ15386 1083 aa16.44■□□□□ 0.22
CIITA-210ENST00000575513 OPTNQ96CV9 577 aa16.44■□□□□ 0.22
CIITA-210ENST00000575513 RIOK1Q9BRS2 568 aaKnown RBP16.44■□□□□ 0.22
CIITA-210ENST00000575513 RNF186Q9NXI6 227 aa16.44■□□□□ 0.22
CIITA-210ENST00000575513 PI4KBQ9UBF8 816 aa16.44■□□□□ 0.22
CIITA-210ENST00000575513 ZNF532Q9HCE3 1301 aa16.44■□□□□ 0.22
CIITA-210ENST00000575513 MAGEB6P1A0A0J9YX57 407 aa16.43■□□□□ 0.22
CIITA-210ENST00000575513 CTNND1O60716 968 aaKnown RBP16.43■□□□□ 0.22
CIITA-210ENST00000575513 ALDH1A1P00352 501 aa16.43■□□□□ 0.22
CIITA-210ENST00000575513 ADD2P35612 726 aa16.43■□□□□ 0.22
CIITA-210ENST00000575513 DYNLL1P63167 89 aaKnown RBP16.43■□□□□ 0.22
CIITA-210ENST00000575513 PPATQ06203 517 aa16.43■□□□□ 0.22
CIITA-210ENST00000575513 METTL16Q86W50 562 aaKnown RBP16.43■□□□□ 0.22
CIITA-210ENST00000575513 FOXP4Q8IVH2 680 aaPredicted RBP16.43■□□□□ 0.22
CIITA-210ENST00000575513 MIGA1Q8NAN2 632 aa16.43■□□□□ 0.22
CIITA-210ENST00000575513 ZKSCAN4Q969J2 545 aaPredicted RBP16.43■□□□□ 0.22
CIITA-210ENST00000575513 EDC3Q96F86 508 aaKnown RBP16.43■□□□□ 0.22
CIITA-210ENST00000575513 CFHR5Q9BXR6 569 aa16.43■□□□□ 0.22
CIITA-210ENST00000575513 HERC5Q9UII4 1024 aaKnown RBP16.43■□□□□ 0.22
CIITA-210ENST00000575513 SNCAIPQ9Y6H5 919 aa16.43■□□□□ 0.22
CIITA-210ENST00000575513 FLT1P17948 1338 aa16.43■□□□□ 0.22
CIITA-210ENST00000575513 MX1P20591 662 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 INPP5BP32019 993 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 GJA5P36382 358 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 GTF2A2P52657 109 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 LBX1P52954 281 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 MKRN3Q13064 507 aaKnown RBP16.42■□□□□ 0.22
CIITA-210ENST00000575513 KBTBD3Q8NAB2 608 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 PI4K2BQ8TCG2 481 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 MS4A4AQ96JQ5 239 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 STAP2Q9UGK3 403 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 SALL3Q9BXA9 1300 aa16.42■□□□□ 0.22
CIITA-210ENST00000575513 DOCK2Q92608 1830 aa16.41■□□□□ 0.22
CIITA-210ENST00000575513 TRPA1O75762 1119 aa16.41■□□□□ 0.22
CIITA-210ENST00000575513 IGHDP01880 384 aa16.41■□□□□ 0.22
CIITA-210ENST00000575513 PPIL2Q13356 520 aa16.41■□□□□ 0.22
CIITA-210ENST00000575513 LRRFIP1Q32MZ4 808 aaKnown RBP16.41■□□□□ 0.22
CIITA-210ENST00000575513 OTUD7BQ6GQQ9 843 aa16.41■□□□□ 0.22
CIITA-210ENST00000575513 MAPKAPK5Q8IW41 473 aa16.41■□□□□ 0.22
CIITA-210ENST00000575513 CRNKL1Q9BZJ0 848 aaKnown RBP16.41■□□□□ 0.22
CIITA-210ENST00000575513 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.41■□□□□ 0.22
CIITA-210ENST00000575513 ZFYP08048 801 aaPredicted RBP16.4■□□□□ 0.22
CIITA-210ENST00000575513 USP5P45974 858 aa16.4■□□□□ 0.22
CIITA-210ENST00000575513 IRX6P78412 446 aaPredicted RBP16.4■□□□□ 0.22
CIITA-210ENST00000575513 NOM1Q5C9Z4 860 aaKnown RBP16.4■□□□□ 0.22
CIITA-210ENST00000575513 TICAM2Q86XR7 235 aa16.4■□□□□ 0.22
CIITA-210ENST00000575513 IFNL1Q8IU54 200 aa16.4■□□□□ 0.22
CIITA-210ENST00000575513 SCYL3Q8IZE3 742 aa16.4■□□□□ 0.22
CIITA-210ENST00000575513 OTUD7AQ8TE49 926 aaPredicted RBP16.4■□□□□ 0.22
CIITA-210ENST00000575513 TAOK2Q9UL54 1235 aa16.4■□□□□ 0.22
CIITA-210ENST00000575513 IRF6O14896 467 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 HLA-DOAP06340 250 aa16.39■□□□□ 0.21
CIITA-210ENST00000575513 NUCB1Q02818 461 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms