RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZDHHC15Q96MV8 337 aa20.88■□□□□ 0.93
VPS53-218ENST00000575207 CXXC1Q9P0U4 656 aaPredicted RBP20.88■□□□□ 0.93
VPS53-218ENST00000575207 PLXNB2O15031 1838 aa20.88■□□□□ 0.93
VPS53-218ENST00000575207 IGKV5-2P06315 115 aa20.87■□□□□ 0.93
VPS53-218ENST00000575207 CYP2B6P20813 491 aa20.87■□□□□ 0.93
VPS53-218ENST00000575207 GRIK5Q16478 980 aa20.87■□□□□ 0.93
VPS53-218ENST00000575207 APOBEC3HQ6NTF7 200 aaKnown RBP20.87■□□□□ 0.93
VPS53-218ENST00000575207 TEKT1Q969V4 418 aa20.87■□□□□ 0.93
VPS53-218ENST00000575207 RNPC3Q96LT9 517 aaKnown RBP20.87■□□□□ 0.93
VPS53-218ENST00000575207 MRIQ9BWK5 157 aa20.87■□□□□ 0.93
VPS53-218ENST00000575207 PLA2G12BQ9BX93 195 aa20.87■□□□□ 0.93
VPS53-218ENST00000575207 AGTPBP1Q9UPW5 1226 aa20.87■□□□□ 0.93
VPS53-218ENST00000575207 REV3LO60673 3130 aa20.87■□□□□ 0.93
VPS53-218ENST00000575207 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.86■□□□□ 0.93
VPS53-218ENST00000575207 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.86■□□□□ 0.93
VPS53-218ENST00000575207 CSF1RP07333 972 aa20.86■□□□□ 0.93
VPS53-218ENST00000575207 CCND3P30281 292 aaPredicted RBP20.86■□□□□ 0.93
VPS53-218ENST00000575207 TRMT44Q8IYL2 757 aaKnown RBP20.86■□□□□ 0.93
VPS53-218ENST00000575207 FAM151AQ8WW52 585 aa20.86■□□□□ 0.93
VPS53-218ENST00000575207 PNMA3Q9UL41 463 aa20.86■□□□□ 0.93
VPS53-218ENST00000575207 AK9Q5TCS8 1911 aa20.85■□□□□ 0.93
VPS53-218ENST00000575207 PTPRAP18433 802 aa20.85■□□□□ 0.93
VPS53-218ENST00000575207 GCLCP48506 637 aaPredicted RBP20.85■□□□□ 0.93
VPS53-218ENST00000575207 LMOD3Q0VAK6 560 aa20.85■□□□□ 0.93
VPS53-218ENST00000575207 TIFAQ96CG3 184 aa20.85■□□□□ 0.93
VPS53-218ENST00000575207 PTPRFP10586 1907 aa20.84■□□□□ 0.93
VPS53-218ENST00000575207 H7C1W4 665 aa20.84■□□□□ 0.93
VPS53-218ENST00000575207 DUSP27Q5VZP5 1158 aa20.84■□□□□ 0.93
VPS53-218ENST00000575207 SCYL3Q8IZE3 742 aa20.84■□□□□ 0.93
VPS53-218ENST00000575207 ATP11BQ9Y2G3 1177 aa20.84■□□□□ 0.93
VPS53-218ENST00000575207 CCDC85BQ15834 202 aaPredicted RBP20.83■□□□□ 0.93
VPS53-218ENST00000575207 A0A1B0GUL6 1792 aa20.82■□□□□ 0.92
VPS53-218ENST00000575207 PHF20L1A8MW92 1017 aa20.82■□□□□ 0.92
VPS53-218ENST00000575207 ZKSCAN1P17029 563 aaPredicted RBP20.82■□□□□ 0.92
VPS53-218ENST00000575207 ADGRE1Q14246 886 aa20.82■□□□□ 0.92
VPS53-218ENST00000575207 SOCS4Q8WXH5 440 aa20.82■□□□□ 0.92
VPS53-218ENST00000575207 NUDT12Q9BQG2 462 aa20.82■□□□□ 0.92
VPS53-218ENST00000575207 PRDM12Q9H4Q4 367 aa20.82■□□□□ 0.92
VPS53-218ENST00000575207 PRDM5Q9NQX1 630 aaPredicted RBP20.82■□□□□ 0.92
VPS53-218ENST00000575207 CHD7Q9P2D1 2997 aa20.81■□□□□ 0.92
VPS53-218ENST00000575207 DNM1LO00429 736 aa20.81■□□□□ 0.92
VPS53-218ENST00000575207 DDX58O95786 925 aaKnown RBP20.81■□□□□ 0.92
VPS53-218ENST00000575207 AAK1Q2M2I8 961 aa20.81■□□□□ 0.92
VPS53-218ENST00000575207 UBE3BQ7Z3V4 1068 aa20.81■□□□□ 0.92
VPS53-218ENST00000575207 PDLIM7Q9NR12 457 aa20.81■□□□□ 0.92
VPS53-218ENST00000575207 PICK1Q9NRD5 415 aa20.81■□□□□ 0.92
VPS53-218ENST00000575207 MAP3K2Q9Y2U5 619 aa20.81■□□□□ 0.92
VPS53-218ENST00000575207 WDFY4Q6ZS81 3184 aa20.81■□□□□ 0.92
VPS53-218ENST00000575207 TRIM43BA6NCK2 446 aa20.8■□□□□ 0.92
VPS53-218ENST00000575207 HIBADHP31937 336 aaKnown RBP20.8■□□□□ 0.92
VPS53-218ENST00000575207 EPHB4P54760 987 aa20.8■□□□□ 0.92
VPS53-218ENST00000575207 TREML2Q5T2D2 321 aa20.8■□□□□ 0.92
VPS53-218ENST00000575207 TRIM43Q96BQ3 446 aaPredicted RBP20.8■□□□□ 0.92
VPS53-218ENST00000575207 TSPYL2Q9H2G4 693 aaPredicted RBP20.8■□□□□ 0.92
VPS53-218ENST00000575207 SPINK5Q9NQ38 1064 aaPredicted RBP20.8■□□□□ 0.92
VPS53-218ENST00000575207 FRMPD3Q5JV73 1810 aa20.79■□□□□ 0.92
VPS53-218ENST00000575207 ANKRD18BA2A2Z9 1011 aa20.79■□□□□ 0.92
VPS53-218ENST00000575207 TMPOP42166 694 aaKnown RBP20.79■□□□□ 0.92
VPS53-218ENST00000575207 SNX17Q15036 470 aa20.79■□□□□ 0.92
VPS53-218ENST00000575207 SLC39A5Q6ZMH5 540 aa20.79■□□□□ 0.92
VPS53-218ENST00000575207 LPAR1Q92633 364 aa20.79■□□□□ 0.92
VPS53-218ENST00000575207 USP6NLQ92738 828 aa20.79■□□□□ 0.92
VPS53-218ENST00000575207 FAM84BQ96KN1 310 aaPredicted RBP20.79■□□□□ 0.92
VPS53-218ENST00000575207 MORF4L1Q9UBU8 362 aa20.79■□□□□ 0.92
VPS53-218ENST00000575207 SMIM22K7EJ46 135 aa20.78■□□□□ 0.92
VPS53-218ENST00000575207 GYG1P46976 350 aa20.78■□□□□ 0.92
VPS53-218ENST00000575207 SH3RF1Q7Z6J0 888 aa20.78■□□□□ 0.92
VPS53-218ENST00000575207 TBC1D22AQ8WUA7 517 aa20.78■□□□□ 0.92
VPS53-218ENST00000575207 LAS1LQ9Y4W2 734 aaKnown RBP20.78■□□□□ 0.92
VPS53-218ENST00000575207 RLFQ13129 1914 aa20.78■□□□□ 0.92
VPS53-218ENST00000575207 FAM86C2PA6NEL3 165 aa20.77■□□□□ 0.92
VPS53-218ENST00000575207 TRIM75PA6NK02 468 aa20.77■□□□□ 0.92
VPS53-218ENST00000575207 NEURL1BA8MQ27 555 aa20.77■□□□□ 0.92
VPS53-218ENST00000575207 NHLH1Q02575 133 aa20.77■□□□□ 0.92
VPS53-218ENST00000575207 TFF2Q03403 129 aa20.77■□□□□ 0.92
VPS53-218ENST00000575207 CWF19L2Q2TBE0 894 aaKnown RBP20.77■□□□□ 0.92
VPS53-218ENST00000575207 HHIPL2Q6UWX4 724 aa20.77■□□□□ 0.92
VPS53-218ENST00000575207 PROCA1Q8NCQ7 364 aaPredicted RBP20.77■□□□□ 0.92
VPS53-218ENST00000575207 DAGLAQ9Y4D2 1042 aa20.77■□□□□ 0.92
VPS53-218ENST00000575207 ATRNL1Q5VV63 1379 aa20.76■□□□□ 0.91
VPS53-218ENST00000575207 MSCO60682 206 aa20.76■□□□□ 0.91
VPS53-218ENST00000575207 KCNQ1P51787 676 aa20.76■□□□□ 0.91
VPS53-218ENST00000575207 CCL14Q16627 93 aa20.76■□□□□ 0.91
VPS53-218ENST00000575207 KSR2Q6VAB6 950 aa20.76■□□□□ 0.91
VPS53-218ENST00000575207 ITGB8P26012 769 aa20.75■□□□□ 0.91
VPS53-218ENST00000575207 CASP7P55210 303 aa20.75■□□□□ 0.91
VPS53-218ENST00000575207 TCP10Q12799 353 aa20.75■□□□□ 0.91
VPS53-218ENST00000575207 TRIM60Q495X7 471 aa20.75■□□□□ 0.91
VPS53-218ENST00000575207 KHSRPQ92945 711 aaKnown RBP eCLIP20.75■□□□□ 0.91
VPS53-218ENST00000575207 DDX20Q9UHI6 824 aaKnown RBP20.75■□□□□ 0.91
VPS53-218ENST00000575207 PHIPQ8WWQ0 1821 aa20.74■□□□□ 0.91
VPS53-218ENST00000575207 IGFBP4P22692 258 aa20.74■□□□□ 0.91
VPS53-218ENST00000575207 FOXK2Q01167 660 aa20.74■□□□□ 0.91
VPS53-218ENST00000575207 NEXNQ0ZGT2 675 aa20.74■□□□□ 0.91
VPS53-218ENST00000575207 UBE4AQ14139 1066 aa20.74■□□□□ 0.91
VPS53-218ENST00000575207 C1orf53Q5VUE5 145 aa20.74■□□□□ 0.91
VPS53-218ENST00000575207 CFAP54Q96N23 3096 aa20.74■□□□□ 0.91
VPS53-218ENST00000575207 PI4KAP2A4QPH2 592 aa20.73■□□□□ 0.91
VPS53-218ENST00000575207 PRR33A8MZF0 331 aa20.73■□□□□ 0.91
VPS53-218ENST00000575207 NFIAQ12857 509 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms