RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 CKAP2LQ8IYA6 745 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 CLSTN2Q9H4D0 955 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 ANAPC4Q9UJX5 808 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 TAOK2Q9UL54 1235 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 PRDX5P30044 214 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 PRR5LQ6MZQ0 368 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 AIFM3Q96NN9 605 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 UBAC1Q9BSL1 405 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 BRIP1Q9BX63 1249 aa16.36■□□□□ 0.21
VPS33B-208ENST00000574755 NTRK3Q16288 839 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 CCAR1Q8IX12 1150 aaKnown RBP16.35■□□□□ 0.21
VPS33B-208ENST00000574755 ESR2Q92731 530 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 MTA3Q9BTC8 594 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 FAM217BQ9NTX9 383 aaPredicted RBP16.35■□□□□ 0.21
VPS33B-208ENST00000574755 JAG2Q9Y219 1238 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 MAST2Q6P0Q8 1798 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 GYS1P13807 737 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 KIF23Q02241 960 aaPredicted RBP16.35■□□□□ 0.21
VPS33B-208ENST00000574755 SLC27A3Q5K4L6 730 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 TMTC2Q8N394 836 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 RPGRQ92834 1020 aaKnown RBP16.35■□□□□ 0.21
VPS33B-208ENST00000574755 AATFQ9NY61 560 aaKnown RBP eCLIP16.35■□□□□ 0.21
VPS33B-208ENST00000574755 RTEL1Q9NZ71 1219 aa16.35■□□□□ 0.21
VPS33B-208ENST00000574755 BRWD3Q6RI45 1802 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 RANBP6O60518 1105 aaKnown RBP16.34■□□□□ 0.21
VPS33B-208ENST00000574755 TRIM37O94972 964 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 HS1BP3Q53T59 392 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 MYSM1Q5VVJ2 828 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 RGS22Q8NE09 1264 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 USP25Q9UHP3 1055 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 MYH2Q9UKX2 1941 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 KIF28PB7ZC32 967 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 SMIM22K7EJ46 135 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 CLCN1P35523 988 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 ST5P78524 1137 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 TYRO3Q06418 890 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 CCDC73Q6ZRK6 1079 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 KRT27Q7Z3Y8 459 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 SLC51AQ86UW1 340 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 SLC26A6Q9BXS9 759 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 DUOX1Q9NRD9 1551 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 LEMD3Q9Y2U8 911 aa16.34■□□□□ 0.21
VPS33B-208ENST00000574755 IRS2Q9Y4H2 1338 aa16.33■□□□□ 0.21
VPS33B-208ENST00000574755 CYP2D7A0A087X1C5 515 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 SSRP1Q08945 709 aaKnown RBP16.33■□□□□ 0.2
VPS33B-208ENST00000574755 TRIM29Q14134 588 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 STK38Q15208 465 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 SF3A1Q15459 793 aaKnown RBP16.33■□□□□ 0.2
VPS33B-208ENST00000574755 KRT40Q6A162 431 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 RBM43Q6ZSC3 357 aaKnown RBP16.33■□□□□ 0.2
VPS33B-208ENST00000574755 ZSCAN30Q86W11 494 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 POLR3EQ9NVU0 708 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 CLIC4Q9Y696 253 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 TNKSO95271 1327 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 XDHP47989 1333 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 NID2Q14112 1375 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 GNL2Q13823 731 aaKnown RBP16.33■□□□□ 0.2
VPS33B-208ENST00000574755 RTN1Q16799 776 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 CTR9Q6PD62 1173 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 DZIP1Q86YF9 867 aaKnown RBP16.33■□□□□ 0.2
VPS33B-208ENST00000574755 LINC00301Q8NCQ3 95 aa16.33■□□□□ 0.2
VPS33B-208ENST00000574755 CRNKL1Q9BZJ0 848 aaKnown RBP16.33■□□□□ 0.2
VPS33B-208ENST00000574755 STK36Q9NRP7 1315 aa16.32■□□□□ 0.2
VPS33B-208ENST00000574755 SERPINB2P05120 415 aa16.32■□□□□ 0.2
VPS33B-208ENST00000574755 IFNAR1P17181 557 aa16.32■□□□□ 0.2
VPS33B-208ENST00000574755 SPTY2D1Q68D10 685 aaPredicted RBP16.32■□□□□ 0.2
VPS33B-208ENST00000574755 KCNG4Q8TDN1 519 aa16.32■□□□□ 0.2
VPS33B-208ENST00000574755 GOLPH3LQ9H4A5 285 aa16.32■□□□□ 0.2
VPS33B-208ENST00000574755 PCDHA7Q9UN72 937 aa16.32■□□□□ 0.2
VPS33B-208ENST00000574755 MRVI1Q9Y6F6 885 aa16.32■□□□□ 0.2
VPS33B-208ENST00000574755 USP17L12C9JPN9 530 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 USP17L21D6R901 530 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 FMNL1O95466 1100 aaPredicted RBP16.31■□□□□ 0.2
VPS33B-208ENST00000574755 YEATS4O95619 227 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 MSNP26038 577 aaKnown RBP16.31■□□□□ 0.2
VPS33B-208ENST00000574755 SASS6Q6UVJ0 657 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 ZNF654Q8IZM8 581 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 NUP133Q8WUM0 1156 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 CCDC196A0A1B0GTZ2 297 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 PRDM1O75626 825 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 PLCB2Q00722 1185 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 ADALQ6DHV7 355 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 TRIM22Q8IYM9 498 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 FSIP1Q8NA03 581 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 WASF1Q92558 559 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 LAMB1P07942 1786 aa16.31■□□□□ 0.2
VPS33B-208ENST00000574755 UBE2Q2LH0YL09 131 aa16.3■□□□□ 0.2
VPS33B-208ENST00000574755 PCP11498 1178 aaKnown RBP16.3■□□□□ 0.2
VPS33B-208ENST00000574755 FAM160A1Q05DH4 1040 aa16.3■□□□□ 0.2
VPS33B-208ENST00000574755 TMED8Q6PL24 325 aaPredicted RBP16.3■□□□□ 0.2
VPS33B-208ENST00000574755 ZNF804AQ7Z570 1209 aa16.3■□□□□ 0.2
VPS33B-208ENST00000574755 FAM200AQ8TCP9 573 aa16.3■□□□□ 0.2
VPS33B-208ENST00000574755 DCP1AQ9NPI6 582 aaPredicted RBP16.3■□□□□ 0.2
VPS33B-208ENST00000574755 ATP8A2Q9NTI2 1148 aa16.3■□□□□ 0.2
VPS33B-208ENST00000574755 CCDC39Q9UFE4 941 aa16.3■□□□□ 0.2
VPS33B-208ENST00000574755 SPTLC2O15270 562 aa16.3■□□□□ 0.2
VPS33B-208ENST00000574755 KINO60870 393 aaKnown RBP16.3■□□□□ 0.2
VPS33B-208ENST00000574755 PTMAP06454 111 aaKnown RBP16.3■□□□□ 0.2
VPS33B-208ENST00000574755 RCAN1P53805 252 aa16.3■□□□□ 0.2
VPS33B-208ENST00000574755 SNW1Q13573 536 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms