RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 CAMTA2O94983 1202 aa12.18□□□□□ -0.46
CIITA-208ENST00000572665 SMCPP49901 116 aaPredicted RBP12.18□□□□□ -0.46
CIITA-208ENST00000572665 RNF144AP50876 292 aaPredicted RBP12.18□□□□□ -0.46
CIITA-208ENST00000572665 MRPL14Q6P1L8 145 aaKnown RBP12.18□□□□□ -0.46
CIITA-208ENST00000572665 TPTE2Q6XPS3 522 aa12.18□□□□□ -0.46
CIITA-208ENST00000572665 CAPN12Q6ZSI9 719 aa12.18□□□□□ -0.46
CIITA-208ENST00000572665 MCM10Q7L590 875 aa12.18□□□□□ -0.46
CIITA-208ENST00000572665 NBPF5PQ86XG9 351 aaPredicted RBP12.18□□□□□ -0.46
CIITA-208ENST00000572665 C2orf49Q9BVC5 232 aaPredicted RBP12.18□□□□□ -0.46
CIITA-208ENST00000572665 SEPT3Q9UH03 358 aa12.18□□□□□ -0.46
CIITA-208ENST00000572665 USP16Q9Y5T5 823 aa12.18□□□□□ -0.46
CIITA-208ENST00000572665 LAMB4A4D0S4 1761 aa12.18□□□□□ -0.46
CIITA-208ENST00000572665 ARFGEF2Q9Y6D5 1785 aa12.18□□□□□ -0.46
CIITA-208ENST00000572665 CACNA1SQ13698 1873 aa12.17□□□□□ -0.46
CIITA-208ENST00000572665 FER1L6Q2WGJ9 1857 aa12.17□□□□□ -0.46
CIITA-208ENST00000572665 PKDCCQ504Y2 493 aa12.17□□□□□ -0.46
CIITA-208ENST00000572665 FOXD4L5Q5VV16 416 aaPredicted RBP12.17□□□□□ -0.46
CIITA-208ENST00000572665 MASTLQ96GX5 879 aa12.17□□□□□ -0.46
CIITA-208ENST00000572665 GRIP2Q9C0E4 1043 aa12.17□□□□□ -0.46
CIITA-208ENST00000572665 DLG5Q8TDM6 1919 aa12.17□□□□□ -0.46
CIITA-208ENST00000572665 LTBP3Q9NS15 1303 aa12.16□□□□□ -0.46
CIITA-208ENST00000572665 MAPK8IP3Q9UPT6 1336 aa12.16□□□□□ -0.46
CIITA-208ENST00000572665 KCNQ3O43525 872 aa12.16□□□□□ -0.46
CIITA-208ENST00000572665 BMP2P12643 396 aa12.16□□□□□ -0.46
CIITA-208ENST00000572665 CTSOP43234 321 aaPredicted RBP12.16□□□□□ -0.46
CIITA-208ENST00000572665 CTC1Q2NKJ3 1217 aa12.16□□□□□ -0.46
CIITA-208ENST00000572665 SND1Q7KZF4 910 aaKnown RBP eCLIP12.16□□□□□ -0.46
CIITA-208ENST00000572665 TAOK3Q9H2K8 898 aa12.16□□□□□ -0.46
CIITA-208ENST00000572665 POLMQ9NP87 494 aaPredicted RBP12.16□□□□□ -0.46
CIITA-208ENST00000572665 COL11A2P13942 1736 aaPredicted RBP12.15□□□□□ -0.46
CIITA-208ENST00000572665 SRGNP10124 158 aa12.15□□□□□ -0.46
CIITA-208ENST00000572665 NPR1P16066 1061 aa12.15□□□□□ -0.46
CIITA-208ENST00000572665 GTF2E1P29083 439 aaPredicted RBP12.15□□□□□ -0.46
CIITA-208ENST00000572665 TEAD4Q15561 434 aa12.15□□□□□ -0.46
CIITA-208ENST00000572665 C6orf118Q5T5N4 469 aa12.15□□□□□ -0.46
CIITA-208ENST00000572665 TMCO4Q5TGY1 634 aa12.15□□□□□ -0.46
CIITA-208ENST00000572665 TMEM214Q6NUQ4 689 aaKnown RBP12.15□□□□□ -0.46
CIITA-208ENST00000572665 ZDHHC1Q8WTX9 485 aa12.15□□□□□ -0.46
CIITA-208ENST00000572665 VTI1AQ96AJ9 217 aa12.15□□□□□ -0.46
CIITA-208ENST00000572665 NFKBIEO00221 500 aa12.14□□□□□ -0.47
CIITA-208ENST00000572665 BMP1P13497 986 aa12.14□□□□□ -0.47
CIITA-208ENST00000572665 ALDH1B1P30837 517 aa12.14□□□□□ -0.47
CIITA-208ENST00000572665 DCTN1Q14203 1278 aa12.14□□□□□ -0.47
CIITA-208ENST00000572665 PRPF40BQ6NWY9 871 aaKnown RBP12.14□□□□□ -0.47
CIITA-208ENST00000572665 CRIPAKQ8N1N5 446 aa12.14□□□□□ -0.47
CIITA-208ENST00000572665 NYXQ9GZU5 481 aa12.14□□□□□ -0.47
CIITA-208ENST00000572665 NIP7Q9Y221 180 aaKnown RBP eCLIP12.14□□□□□ -0.47
CIITA-208ENST00000572665 CHMP3Q9Y3E7 222 aa12.14□□□□□ -0.47
CIITA-208ENST00000572665 KDM3BQ7LBC6 1761 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 SOWAHDA6NJG2 315 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 EML1O00423 815 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 HIRAP54198 1017 aaPredicted RBP12.13□□□□□ -0.47
CIITA-208ENST00000572665 CCDC93Q567U6 631 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 KIF6Q6ZMV9 814 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 TRIM46Q7Z4K8 759 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 RHBDD1Q8TEB9 315 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 GTF3C2Q8WUA4 911 aaPredicted RBP12.13□□□□□ -0.47
CIITA-208ENST00000572665 KLRG1Q96E93 195 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 NIFKQ9BYG3 293 aaKnown RBP12.13□□□□□ -0.47
CIITA-208ENST00000572665 EGFL7Q9UHF1 273 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 SLX4Q8IY92 1834 aa12.13□□□□□ -0.47
CIITA-208ENST00000572665 SERTM1A2A2V5 107 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 ERVV-1B6SEH8 477 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 ABL1P00519 1130 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 NOS2P35228 1153 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 PIP4K2AP48426 406 aaPredicted RBP12.12□□□□□ -0.47
CIITA-208ENST00000572665 LMOD3Q0VAK6 560 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 SCARF1Q14162 830 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 NAA30Q147X3 362 aaPredicted RBP12.12□□□□□ -0.47
CIITA-208ENST00000572665 RALBP1Q15311 655 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 NFE2L2Q16236 605 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 SH3PXD2AQ5TCZ1 1133 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 DNAJC5GQ8N7S2 189 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 RNF217Q8TC41 542 aa12.12□□□□□ -0.47
CIITA-208ENST00000572665 DNMT3AQ9Y6K1 912 aaPredicted RBP12.12□□□□□ -0.47
CIITA-208ENST00000572665 PRAMEF22A3QJZ6 481 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 IQCA1LA6NCM1 817 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 AXIN1O15169 862 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 ZNF211Q13398 564 aaPredicted RBP12.11□□□□□ -0.47
CIITA-208ENST00000572665 LAPTM4AQ15012 233 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 GNASQ5JWF2 1037 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 RTKN2Q8IZC4 609 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.11□□□□□ -0.47
CIITA-208ENST00000572665 ZNF232Q9UNY5 417 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 NUP98P52948 1817 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 ERBB4Q15303 1308 aa12.11□□□□□ -0.47
CIITA-208ENST00000572665 SCN4AP35499 1836 aa12.1□□□□□ -0.47
CIITA-208ENST00000572665 KLRG2A4D1S0 409 aaPredicted RBP12.1□□□□□ -0.47
CIITA-208ENST00000572665 SPATA31C2B4DYI2 1134 aa12.1□□□□□ -0.47
CIITA-208ENST00000572665 NBPF10Q6P3W6 841 aaKnown RBP12.1□□□□□ -0.47
CIITA-208ENST00000572665 BABAM1Q9NWV8 329 aa12.1□□□□□ -0.47
CIITA-208ENST00000572665 CEP350Q5VT06 3117 aa12.1□□□□□ -0.47
CIITA-208ENST00000572665 PRELPP51888 382 aa12.09□□□□□ -0.47
CIITA-208ENST00000572665 FKBP4Q02790 459 aaKnown RBP eCLIP12.09□□□□□ -0.47
CIITA-208ENST00000572665 C4orf17Q53FE4 359 aa12.09□□□□□ -0.47
CIITA-208ENST00000572665 PLEKHF1Q96S99 279 aa12.09□□□□□ -0.47
CIITA-208ENST00000572665 TMX4Q9H1E5 349 aaPredicted RBP12.09□□□□□ -0.47
CIITA-208ENST00000572665 MIS18AQ9NYP9 233 aa12.09□□□□□ -0.47
CIITA-208ENST00000572665 MAP3K15Q6ZN16 1313 aa12.09□□□□□ -0.47
CIITA-208ENST00000572665 IBTKQ9P2D0 1353 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms