RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 LDHBP07195 334 aaKnown RBP9.97□□□□□ -0.81
VPS53-214ENST00000572607 ADORA1P30542 326 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 PHKA1P46020 1223 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 TIMM10P62072 90 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 PRKG1Q13976 671 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 SSH3Q8TE77 659 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 XAGE2Q96GT9 111 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 MRIQ9BWK5 157 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 TDRD3Q9H7E2 651 aaKnown RBP9.97□□□□□ -0.81
VPS53-214ENST00000572607 RYDENQ9NUL5 291 aaKnown RBP9.97□□□□□ -0.81
VPS53-214ENST00000572607 RNF186Q9NXI6 227 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 ZNF70Q9UC06 446 aaPredicted RBP9.97□□□□□ -0.81
VPS53-214ENST00000572607 PCDHAC2Q9Y5I4 1007 aa9.97□□□□□ -0.81
VPS53-214ENST00000572607 PAPPA2Q9BXP8 1791 aa9.96□□□□□ -0.81
VPS53-214ENST00000572607 CENPFP49454 3210 aa9.96□□□□□ -0.81
VPS53-214ENST00000572607 UBE2Q2LH0YL09 131 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 SLC10A3P09131 477 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 KIF23Q02241 960 aaPredicted RBP9.96□□□□□ -0.82
VPS53-214ENST00000572607 RASA3Q14644 834 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 GRIK5Q16478 980 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 PPP4R3BQ5MIZ7 849 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 SPTY2D1Q68D10 685 aaPredicted RBP9.96□□□□□ -0.82
VPS53-214ENST00000572607 CEP85Q6P2H3 762 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 ERC1Q8IUD2 1116 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 SLF2Q8IX21 1173 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 ZDHHC15Q96MV8 337 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 SAGE1Q9NXZ1 904 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 HCSTQ9UBK5 93 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 ANGEL1Q9UNK9 670 aaKnown RBP9.96□□□□□ -0.82
VPS53-214ENST00000572607 COG6Q9Y2V7 657 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 SALL1Q9NSC2 1324 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 BRCA2P51587 3418 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 ARAP2Q8WZ64 1704 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 LAMB1P07942 1786 aa9.96□□□□□ -0.82
VPS53-214ENST00000572607 TCP10L2B9ZVM9 353 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 HRO43593 1189 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 HMMRO75330 724 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 UQCRFS1P1P0C7P4 283 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 IREB2P48200 963 aaKnown RBP9.95□□□□□ -0.82
VPS53-214ENST00000572607 PSEN2P49810 448 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 RASGRF1Q13972 1273 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 HSP90AB4PQ58FF6 505 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 CCDC158Q5M9N0 1113 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 DMRTA1Q5VZB9 504 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 HHIPL2Q6UWX4 724 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 MOB2Q70IA6 237 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 DZIP1Q86YF9 867 aaKnown RBP9.95□□□□□ -0.82
VPS53-214ENST00000572607 RASAL3Q86YV0 1011 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 HOOK2Q96ED9 719 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 CSRNP1Q96S65 589 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 GPR108Q9NPR9 543 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 ABCF2Q9UG63 623 aa9.95□□□□□ -0.82
VPS53-214ENST00000572607 PDS5AQ29RF7 1337 aaKnown RBP9.95□□□□□ -0.82
VPS53-214ENST00000572607 TRPA1O75762 1119 aa9.94□□□□□ -0.82
VPS53-214ENST00000572607 PRDX5P30044 214 aa9.94□□□□□ -0.82
VPS53-214ENST00000572607 PDE3AQ14432 1141 aa9.94□□□□□ -0.82
VPS53-214ENST00000572607 TNNI3KQ59H18 835 aa9.94□□□□□ -0.82
VPS53-214ENST00000572607 TTC39AQ5SRH9 613 aa9.94□□□□□ -0.82
VPS53-214ENST00000572607 NBPF12Q5TAG4 269 aaPredicted RBP9.94□□□□□ -0.82
VPS53-214ENST00000572607 ERICH6Q7L0X2 663 aa9.94□□□□□ -0.82
VPS53-214ENST00000572607 RPAP2Q8IXW5 612 aaPredicted RBP9.94□□□□□ -0.82
VPS53-214ENST00000572607 SPATA5Q8NB90 893 aa9.94□□□□□ -0.82
VPS53-214ENST00000572607 YTHDC1Q96MU7 727 aaKnown RBP9.94□□□□□ -0.82
VPS53-214ENST00000572607 NOP58Q9Y2X3 529 aaKnown RBP9.94□□□□□ -0.82
VPS53-214ENST00000572607 FPGT-TNNI3KV9GXZ4 949 aa9.94□□□□□ -0.82
VPS53-214ENST00000572607 AOX1Q06278 1338 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 UNCXA6NJT0 531 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 CACNB3P54284 484 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 GSTO1P78417 241 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 SREBF2Q12772 1141 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 DIXDC1Q155Q3 683 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 PRPF38BQ5VTL8 546 aaKnown RBP9.93□□□□□ -0.82
VPS53-214ENST00000572607 FKBP1CQ5VVH2 108 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 APOBEC3HQ6NTF7 200 aaKnown RBP9.93□□□□□ -0.82
VPS53-214ENST00000572607 FAM83AQ86UY5 434 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 OXER1Q8TDS5 423 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 SLC10A4Q96EP9 437 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.93□□□□□ -0.82
VPS53-214ENST00000572607 DAGLAQ9Y4D2 1042 aa9.93□□□□□ -0.82
VPS53-214ENST00000572607 RBBP6Q7Z6E9 1792 aaKnown RBP9.93□□□□□ -0.82
VPS53-214ENST00000572607 LDHCP07864 332 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 ARID4AP29374 1257 aaPredicted RBP9.92□□□□□ -0.82
VPS53-214ENST00000572607 MAP3K11Q16584 847 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 DCAF15Q66K64 600 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 CTU1Q7Z7A3 348 aaKnown RBP9.92□□□□□ -0.82
VPS53-214ENST00000572607 ANKRD13AQ8IZ07 590 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 DBNDD2Q9BQY9 259 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 NOL10Q9BSC4 688 aaKnown RBP9.92□□□□□ -0.82
VPS53-214ENST00000572607 TMEM39BQ9GZU3 492 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 CRISPLD2Q9H0B8 497 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 USP40Q9NVE5 1235 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 RAI14Q9P0K7 980 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 HMG20BQ9P0W2 317 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 HPS5Q9UPZ3 1129 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 EXOC6BQ9Y2D4 811 aa9.92□□□□□ -0.82
VPS53-214ENST00000572607 LDLRAD1Q5T700 205 aa9.91□□□□□ -0.82
VPS53-214ENST00000572607 FAM151AQ8WW52 585 aa9.91□□□□□ -0.82
VPS53-214ENST00000572607 ZBTB40Q9NUA8 1239 aa9.91□□□□□ -0.82
VPS53-214ENST00000572607 LRP2BPQ9P2M1 347 aa9.91□□□□□ -0.82
VPS53-214ENST00000572607 FZD1Q9UP38 647 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms