RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 ARHGAP39Q9C0H5 1083 aa22.36■■□□□ 1.17
CHD3-214ENST00000572579 EFCC1Q9HA90 598 aa22.36■■□□□ 1.17
CHD3-214ENST00000572579 ZFYVE28Q9HCC9 887 aa22.36■■□□□ 1.17
CHD3-214ENST00000572579 SPTY2D1Q68D10 685 aaPredicted RBP22.35■■□□□ 1.17
CHD3-214ENST00000572579 DBNDD2Q9BQY9 259 aa22.35■■□□□ 1.17
CHD3-214ENST00000572579 NOP58Q9Y2X3 529 aaKnown RBP22.35■■□□□ 1.17
CHD3-214ENST00000572579 TLR2O60603 784 aa22.34■■□□□ 1.17
CHD3-214ENST00000572579 TNNI3KQ59H18 835 aa22.34■■□□□ 1.17
CHD3-214ENST00000572579 SNRKQ9NRH2 765 aa22.34■■□□□ 1.17
CHD3-214ENST00000572579 FPGT-TNNI3KV9GXZ4 949 aa22.34■■□□□ 1.17
CHD3-214ENST00000572579 ZBED9Q6R2W3 1325 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 POTEFA5A3E0 1075 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 SURF6O75683 361 aaKnown RBP22.33■■□□□ 1.17
CHD3-214ENST00000572579 CTGFP29279 349 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 PICALMQ13492 652 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 GORABQ5T7V8 394 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 GPAT2Q6NUI2 795 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 ITPRIPQ8IWB1 547 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 PANK1Q8TE04 598 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 GPR108Q9NPR9 543 aa22.33■■□□□ 1.17
CHD3-214ENST00000572579 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.33■■□□□ 1.17
CHD3-214ENST00000572579 MYH13Q9UKX3 1938 aa22.33■■□□□ 1.16
CHD3-214ENST00000572579 C17orf99Q6UX52 265 aa22.32■■□□□ 1.16
CHD3-214ENST00000572579 ZCCHC17Q9NP64 241 aaKnown RBP22.32■■□□□ 1.16
CHD3-214ENST00000572579 TLR7Q9NYK1 1049 aaKnown RBP22.32■■□□□ 1.16
CHD3-214ENST00000572579 ADGRA2Q96PE1 1338 aa22.31■■□□□ 1.16
CHD3-214ENST00000572579 PTPRAP18433 802 aa22.31■■□□□ 1.16
CHD3-214ENST00000572579 ANKRD23Q86SG2 305 aa22.31■■□□□ 1.16
CHD3-214ENST00000572579 SLF2Q8IX21 1173 aa22.31■■□□□ 1.16
CHD3-214ENST00000572579 FTSJ3Q8IY81 847 aaKnown RBP22.31■■□□□ 1.16
CHD3-214ENST00000572579 ARMC5Q96C12 935 aa22.31■■□□□ 1.16
CHD3-214ENST00000572579 PDHXO00330 501 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 CYP2E1P05181 493 aaPredicted RBP22.3■■□□□ 1.16
CHD3-214ENST00000572579 RRP1BQ14684 758 aaKnown RBP22.3■■□□□ 1.16
CHD3-214ENST00000572579 CEP85Q6P2H3 762 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 ADGRA1Q86SQ6 560 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 CCDC84Q86UT8 332 aaPredicted RBP22.3■■□□□ 1.16
CHD3-214ENST00000572579 SCYL3Q8IZE3 742 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 EAF2Q96CJ1 260 aaPredicted RBP22.3■■□□□ 1.16
CHD3-214ENST00000572579 RAI14Q9P0K7 980 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 CPA4Q9UI42 421 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 DBNLQ9UJU6 430 aaKnown RBP22.3■■□□□ 1.16
CHD3-214ENST00000572579 AFG3L2Q9Y4W6 797 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 PTCH2Q9Y6C5 1203 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 ZHX2Q9Y6X8 837 aa22.3■■□□□ 1.16
CHD3-214ENST00000572579 MYH2Q9UKX2 1941 aa22.29■■□□□ 1.16
CHD3-214ENST00000572579 FAM196BA6NMK8 535 aa22.29■■□□□ 1.16
CHD3-214ENST00000572579 CXCL11O14625 94 aa22.29■■□□□ 1.16
CHD3-214ENST00000572579 NPM3O75607 178 aaKnown RBP22.29■■□□□ 1.16
CHD3-214ENST00000572579 UQCRFS1P1P0C7P4 283 aa22.29■■□□□ 1.16
CHD3-214ENST00000572579 ZSCAN29Q8IWY8 852 aaPredicted RBP22.29■■□□□ 1.16
CHD3-214ENST00000572579 LACTBP83111 547 aaPredicted RBP22.28■■□□□ 1.16
CHD3-214ENST00000572579 SH3RF3Q8TEJ3 882 aaPredicted RBP22.28■■□□□ 1.16
CHD3-214ENST00000572579 CCDC8Q9H0W5 538 aaPredicted RBP22.28■■□□□ 1.16
CHD3-214ENST00000572579 PIH1D3Q9NQM4 214 aaKnown RBP22.28■■□□□ 1.16
CHD3-214ENST00000572579 ECM2O94769 699 aaPredicted RBP22.27■■□□□ 1.16
CHD3-214ENST00000572579 ZAP70P43403 619 aa22.27■■□□□ 1.16
CHD3-214ENST00000572579 ZNF512BQ96KM6 892 aaPredicted RBP22.27■■□□□ 1.16
CHD3-214ENST00000572579 LRP2BPQ9P2M1 347 aa22.27■■□□□ 1.16
CHD3-214ENST00000572579 PDE4DIPQ5VU43 2346 aa22.26■■□□□ 1.15
CHD3-214ENST00000572579 A0A0G2JLL6 359 aaPredicted RBP22.26■■□□□ 1.15
CHD3-214ENST00000572579 TBC1D12O60347 775 aa22.26■■□□□ 1.15
CHD3-214ENST00000572579 CTNND1O60716 968 aaKnown RBP22.26■■□□□ 1.15
CHD3-214ENST00000572579 LDHCP07864 332 aa22.26■■□□□ 1.15
CHD3-214ENST00000572579 CYP2C8P10632 490 aa22.26■■□□□ 1.15
CHD3-214ENST00000572579 GSTO1P78417 241 aa22.26■■□□□ 1.15
CHD3-214ENST00000572579 OS9Q13438 667 aaPredicted RBP22.26■■□□□ 1.15
CHD3-214ENST00000572579 TTC39AQ5SRH9 613 aa22.26■■□□□ 1.15
CHD3-214ENST00000572579 PRRT2Q7Z6L0 340 aaPredicted RBP22.26■■□□□ 1.15
CHD3-214ENST00000572579 OSBPL5Q9H0X9 879 aaPredicted RBP22.26■■□□□ 1.15
CHD3-214ENST00000572579 ZNF333Q96JL9 665 aa22.25■■□□□ 1.15
CHD3-214ENST00000572579 NDUFB9Q9Y6M9 179 aa22.25■■□□□ 1.15
CHD3-214ENST00000572579 EN2P19622 333 aaPredicted RBP22.24■■□□□ 1.15
CHD3-214ENST00000572579 PPP4CP60510 307 aa22.24■■□□□ 1.15
CHD3-214ENST00000572579 CCDC158Q5M9N0 1113 aa22.24■■□□□ 1.15
CHD3-214ENST00000572579 TRIM47Q96LD4 638 aa22.24■■□□□ 1.15
CHD3-214ENST00000572579 PICK1Q9NRD5 415 aa22.24■■□□□ 1.15
CHD3-214ENST00000572579 AATFQ9NY61 560 aaKnown RBP eCLIP22.24■■□□□ 1.15
CHD3-214ENST00000572579 EXOC6BQ9Y2D4 811 aa22.24■■□□□ 1.15
CHD3-214ENST00000572579 MAP4K4O95819 1239 aaPredicted RBP22.23■■□□□ 1.15
CHD3-214ENST00000572579 BCRP11274 1271 aa22.23■■□□□ 1.15
CHD3-214ENST00000572579 JAG1P78504 1218 aa22.23■■□□□ 1.15
CHD3-214ENST00000572579 NAA16Q6N069 864 aaPredicted RBP22.23■■□□□ 1.15
CHD3-214ENST00000572579 SIRT2Q8IXJ6 389 aa22.23■■□□□ 1.15
CHD3-214ENST00000572579 TEX11Q8IYF3 940 aa22.23■■□□□ 1.15
CHD3-214ENST00000572579 ZSWIM8A7E2V4 1837 aa22.22■■□□□ 1.15
CHD3-214ENST00000572579 KIAA0100Q14667 2235 aaKnown RBP22.22■■□□□ 1.15
CHD3-214ENST00000572579 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.22■■□□□ 1.15
CHD3-214ENST00000572579 TRIM75PA6NK02 468 aa22.21■■□□□ 1.15
CHD3-214ENST00000572579 PSMC4P43686 418 aa22.21■■□□□ 1.15
CHD3-214ENST00000572579 SH3TC2Q8TF17 1288 aa22.21■■□□□ 1.15
CHD3-214ENST00000572579 ANTXR1Q9H6X2 564 aa22.21■■□□□ 1.15
CHD3-214ENST00000572579 AK9Q5TCS8 1911 aa22.2■■□□□ 1.14
CHD3-214ENST00000572579 DYNLL1P63167 89 aaKnown RBP22.2■■□□□ 1.14
CHD3-214ENST00000572579 SHROOM1Q2M3G4 852 aaPredicted RBP22.2■■□□□ 1.14
CHD3-214ENST00000572579 TGFBRAP1Q8WUH2 860 aa22.2■■□□□ 1.14
CHD3-214ENST00000572579 DNAJC18Q9H819 358 aa22.2■■□□□ 1.14
CHD3-214ENST00000572579 MYCP01106 439 aaPredicted RBP22.19■■□□□ 1.14
CHD3-214ENST00000572579 OSBPP22059 807 aa22.19■■□□□ 1.14
CHD3-214ENST00000572579 ARHGEF6Q15052 776 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms