RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 FOXO4P98177 505 aa16.56■□□□□ 0.24
CCDC40-208ENST00000572270 TRIM32Q13049 653 aa16.56■□□□□ 0.24
CCDC40-208ENST00000572270 LRRC26Q2I0M4 334 aa16.56■□□□□ 0.24
CCDC40-208ENST00000572270 TJAP1Q5JTD0 557 aa16.56■□□□□ 0.24
CCDC40-208ENST00000572270 SCYL3Q8IZE3 742 aa16.56■□□□□ 0.24
CCDC40-208ENST00000572270 LINS1Q8NG48 757 aa16.56■□□□□ 0.24
CCDC40-208ENST00000572270 SEMA6BQ9H3T3 888 aa16.56■□□□□ 0.24
CCDC40-208ENST00000572270 TMEM265A0A087WTH1 108 aa16.55■□□□□ 0.24
CCDC40-208ENST00000572270 CAVIN4Q5BKX8 364 aa16.55■□□□□ 0.24
CCDC40-208ENST00000572270 HHIPL2Q6UWX4 724 aa16.55■□□□□ 0.24
CCDC40-208ENST00000572270 LMBR1LQ6UX01 489 aa16.55■□□□□ 0.24
CCDC40-208ENST00000572270 SUGT1Q9Y2Z0 365 aa16.55■□□□□ 0.24
CCDC40-208ENST00000572270 DOCK2Q92608 1830 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 COL6A1P12109 1028 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 PTPRAP18433 802 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 G2E3Q7L622 706 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 TSPYL6Q8N831 410 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 DNAAF4Q8WXU2 420 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 PRKAG2Q9UGJ0 569 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 AGTPBP1Q9UPW5 1226 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 AFG3L2Q9Y4W6 797 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 TTC28Q96AY4 2481 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 CDH23Q9H251 3354 aa16.54■□□□□ 0.24
CCDC40-208ENST00000572270 PRKAR2AP13861 404 aaKnown RBP16.53■□□□□ 0.24
CCDC40-208ENST00000572270 FKBP5Q13451 457 aaPredicted RBP16.53■□□□□ 0.24
CCDC40-208ENST00000572270 RALBP1Q15311 655 aa16.53■□□□□ 0.24
CCDC40-208ENST00000572270 MAST2Q6P0Q8 1798 aa16.53■□□□□ 0.24
CCDC40-208ENST00000572270 DNAH12Q6ZR08 3092 aa16.53■□□□□ 0.24
CCDC40-208ENST00000572270 DOCK1Q14185 1865 aa16.52■□□□□ 0.24
CCDC40-208ENST00000572270 TRIM75PA6NK02 468 aa16.52■□□□□ 0.24
CCDC40-208ENST00000572270 SLC4A2P04920 1241 aa16.52■□□□□ 0.24
CCDC40-208ENST00000572270 GCLCP48506 637 aaPredicted RBP16.52■□□□□ 0.24
CCDC40-208ENST00000572270 FBXO33Q7Z6M2 555 aa16.52■□□□□ 0.24
CCDC40-208ENST00000572270 TRIB2Q92519 343 aa16.52■□□□□ 0.24
CCDC40-208ENST00000572270 FLIIQ13045 1269 aa16.51■□□□□ 0.23
CCDC40-208ENST00000572270 MAP3K21Q5TCX8 1036 aa16.51■□□□□ 0.23
CCDC40-208ENST00000572270 GJD2Q9UKL4 321 aa16.51■□□□□ 0.23
CCDC40-208ENST00000572270 LRRFIP2Q9Y608 721 aaKnown RBP16.51■□□□□ 0.23
CCDC40-208ENST00000572270 MROH5Q6ZUA9 1318 aa16.5■□□□□ 0.23
CCDC40-208ENST00000572270 PHIPQ8WWQ0 1821 aa16.5■□□□□ 0.23
CCDC40-208ENST00000572270 CYP2B6P20813 491 aa16.5■□□□□ 0.23
CCDC40-208ENST00000572270 NFIAQ12857 509 aa16.5■□□□□ 0.23
CCDC40-208ENST00000572270 CDC42EP5Q6NZY7 148 aa16.5■□□□□ 0.23
CCDC40-208ENST00000572270 ADAMTS8Q9UP79 889 aa16.5■□□□□ 0.23
CCDC40-208ENST00000572270 MYH13Q9UKX3 1938 aa16.5■□□□□ 0.23
CCDC40-208ENST00000572270 PLXNB2O15031 1838 aa16.49■□□□□ 0.23
CCDC40-208ENST00000572270 LTBP2Q14767 1821 aa16.49■□□□□ 0.23
CCDC40-208ENST00000572270 PHF20L1A8MW92 1017 aa16.49■□□□□ 0.23
CCDC40-208ENST00000572270 ZEB1P37275 1124 aaPredicted RBP16.49■□□□□ 0.23
CCDC40-208ENST00000572270 SMAD3P84022 425 aaKnown RBP16.49■□□□□ 0.23
CCDC40-208ENST00000572270 PABPC4Q13310 644 aaKnown RBP eCLIP16.49■□□□□ 0.23
CCDC40-208ENST00000572270 TRMT44Q8IYL2 757 aaKnown RBP16.49■□□□□ 0.23
CCDC40-208ENST00000572270 ZKSCAN1P17029 563 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-208ENST00000572270 HOXD11P31277 338 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-208ENST00000572270 TREML2Q5T2D2 321 aa16.48■□□□□ 0.23
CCDC40-208ENST00000572270 PROCA1Q8NCQ7 364 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-208ENST00000572270 SOCS4Q8WXH5 440 aa16.48■□□□□ 0.23
CCDC40-208ENST00000572270 NUDT12Q9BQG2 462 aa16.48■□□□□ 0.23
CCDC40-208ENST00000572270 TTYH1Q9H313 450 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-208ENST00000572270 FAM198AQ9UFP1 575 aa16.48■□□□□ 0.23
CCDC40-208ENST00000572270 DAGLAQ9Y4D2 1042 aa16.48■□□□□ 0.23
CCDC40-208ENST00000572270 FRMPD3Q5JV73 1810 aa16.47■□□□□ 0.23
CCDC40-208ENST00000572270 SHHQ15465 462 aa16.47■□□□□ 0.23
CCDC40-208ENST00000572270 TWISTNBQ3B726 338 aaPredicted RBP16.47■□□□□ 0.23
CCDC40-208ENST00000572270 EPHA10Q5JZY3 1008 aa16.47■□□□□ 0.23
CCDC40-208ENST00000572270 ZSCAN29Q8IWY8 852 aaPredicted RBP16.47■□□□□ 0.23
CCDC40-208ENST00000572270 PUS3Q9BZE2 481 aaKnown RBP16.47■□□□□ 0.23
CCDC40-208ENST00000572270 SENP6Q9GZR1 1112 aaPredicted RBP16.47■□□□□ 0.23
CCDC40-208ENST00000572270 USP40Q9NVE5 1235 aa16.47■□□□□ 0.23
CCDC40-208ENST00000572270 LOC285556D6RIA3 1793 aa16.46■□□□□ 0.23
CCDC40-208ENST00000572270 CTNND1O60716 968 aaKnown RBP16.46■□□□□ 0.23
CCDC40-208ENST00000572270 XRCC5P13010 732 aaKnown RBP16.46■□□□□ 0.23
CCDC40-208ENST00000572270 CACNB2Q08289 660 aaPredicted RBP16.46■□□□□ 0.23
CCDC40-208ENST00000572270 MAP3K12Q12852 859 aa16.46■□□□□ 0.23
CCDC40-208ENST00000572270 PDE3AQ14432 1141 aa16.46■□□□□ 0.23
CCDC40-208ENST00000572270 METTL24Q5JXM2 366 aa16.46■□□□□ 0.23
CCDC40-208ENST00000572270 ATRNL1Q5VV63 1379 aa16.46■□□□□ 0.23
CCDC40-208ENST00000572270 MYBBP1AQ9BQG0 1328 aaKnown RBP16.45■□□□□ 0.22
CCDC40-208ENST00000572270 APAF1O14727 1248 aa16.45■□□□□ 0.22
CCDC40-208ENST00000572270 LHX8Q68G74 356 aa16.45■□□□□ 0.22
CCDC40-208ENST00000572270 WDR66Q8TBY9 1149 aa16.45■□□□□ 0.22
CCDC40-208ENST00000572270 TSR2Q969E8 191 aaKnown RBP16.45■□□□□ 0.22
CCDC40-208ENST00000572270 SPINK5Q9NQ38 1064 aaPredicted RBP16.45■□□□□ 0.22
CCDC40-208ENST00000572270 CACNA1FO60840 1977 aa16.45■□□□□ 0.22
CCDC40-208ENST00000572270 GRM8O00222 908 aa16.44■□□□□ 0.22
CCDC40-208ENST00000572270 CCND3P30281 292 aaPredicted RBP16.44■□□□□ 0.22
CCDC40-208ENST00000572270 ATN1P54259 1190 aaPredicted RBP16.44■□□□□ 0.22
CCDC40-208ENST00000572270 DIXDC1Q155Q3 683 aa16.44■□□□□ 0.22
CCDC40-208ENST00000572270 C9orf50Q5SZB4 431 aa16.44■□□□□ 0.22
CCDC40-208ENST00000572270 ZFPM1Q8IX07 1006 aa16.44■□□□□ 0.22
CCDC40-208ENST00000572270 RGS3P49796 1198 aa16.43■□□□□ 0.22
CCDC40-208ENST00000572270 RTP1P59025 263 aa16.43■□□□□ 0.22
CCDC40-208ENST00000572270 CCDC84Q86UT8 332 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-208ENST00000572270 USP38Q8NB14 1042 aa16.43■□□□□ 0.22
CCDC40-208ENST00000572270 ASCC2Q9H1I8 757 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-208ENST00000572270 C9orf78Q9NZ63 289 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-208ENST00000572270 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-208ENST00000572270 ENTPD3O75355 529 aa16.42■□□□□ 0.22
CCDC40-208ENST00000572270 IFIT1P09914 478 aaKnown RBP16.42■□□□□ 0.22
CCDC40-208ENST00000572270 BEND3Q5T5X7 828 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms