RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 CEP350Q5VT06 3117 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 WDHD1O75717 1129 aaPredicted RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 LDHBP07195 334 aaKnown RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 ZFYP08048 801 aaPredicted RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 RPS12P25398 132 aaKnown RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 NMIQ13287 307 aaPredicted RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 TNIP1Q15025 636 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 SHROOM1Q2M3G4 852 aaPredicted RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 VPS53Q5VIR6 699 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 MAP1SQ66K74 1059 aaPredicted RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 ZSCAN25Q6NSZ9 544 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 CDC42EP5Q6NZY7 148 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 TMED8Q6PL24 325 aaPredicted RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 ZGPATQ8N5A5 531 aaKnown RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 WDR66Q8TBY9 1149 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 SH3RF3Q8TEJ3 882 aaPredicted RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 FSD1Q9BTV5 496 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS53-209ENST00000570771 TDRD3Q9H7E2 651 aaKnown RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 EPB41L4AQ9HCS5 686 aaPredicted RBP7.75□□□□□ -1.17
VPS53-209ENST00000570771 DIAPH3Q9NSV4 1193 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 GGA3Q9NZ52 723 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 RAI14Q9P0K7 980 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 FAM198AQ9UFP1 575 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 HACL1Q9UJ83 578 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 TACC3Q9Y6A5 838 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 SIPA1L1O43166 1804 aa7.75□□□□□ -1.17
VPS53-209ENST00000570771 ATRNL1Q5VV63 1379 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 RPAP1Q9BWH6 1393 aaPredicted RBP7.74□□□□□ -1.17
VPS53-209ENST00000570771 CYP2D6P10635 497 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 CYP7A1P22680 504 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 BTDP43251 543 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 SLC4A8Q2Y0W8 1093 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 EAPPQ56P03 285 aaPredicted RBP7.74□□□□□ -1.17
VPS53-209ENST00000570771 ZMYM1Q5SVZ6 1142 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 SLC9C2Q5TAH2 1124 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 ANGEL2Q5VTE6 544 aaKnown RBP7.74□□□□□ -1.17
VPS53-209ENST00000570771 SPTY2D1Q68D10 685 aaPredicted RBP7.74□□□□□ -1.17
VPS53-209ENST00000570771 ERICH6Q7L0X2 663 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 ZDHHC15Q96MV8 337 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 GLIS2Q9BZE0 524 aaPredicted RBP7.74□□□□□ -1.17
VPS53-209ENST00000570771 ARMT1Q9H993 441 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 AATFQ9NY61 560 aaKnown RBP eCLIP7.74□□□□□ -1.17
VPS53-209ENST00000570771 LRP2BPQ9P2M1 347 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 TAF6LQ9Y6J9 622 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 MYO3BQ8WXR4 1341 aa7.74□□□□□ -1.17
VPS53-209ENST00000570771 CYP2D7A0A087X1C5 515 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 GPR75-ASB3A0A0A6YYF3 556 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 REC8O95072 547 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 MBD4O95243 580 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 MFAP1P55081 439 aaKnown RBP7.73□□□□□ -1.17
VPS53-209ENST00000570771 MAP3K12Q12852 859 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 NAA16Q6N069 864 aaPredicted RBP7.73□□□□□ -1.17
VPS53-209ENST00000570771 DZIP1Q86YF9 867 aaKnown RBP7.73□□□□□ -1.17
VPS53-209ENST00000570771 MTMR14Q8NCE2 650 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 TBC1D22AQ8WUA7 517 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 SDR42E1Q8WUS8 393 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 TEPSINQ96N21 525 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 BACH2Q9BYV9 841 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 TMEM39BQ9GZU3 492 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 ADARB2Q9NS39 739 aaKnown RBP7.73□□□□□ -1.17
VPS53-209ENST00000570771 ZNF70Q9UC06 446 aaPredicted RBP7.73□□□□□ -1.17
VPS53-209ENST00000570771 MKRN1Q9UHC7 482 aaKnown RBP7.73□□□□□ -1.17
VPS53-209ENST00000570771 SERPINA10Q9UK55 444 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 RAD50Q92878 1312 aa7.73□□□□□ -1.17
VPS53-209ENST00000570771 PAPPA2Q9BXP8 1791 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 DDTLA6NHG4 134 aaPredicted RBP7.72□□□□□ -1.17
VPS53-209ENST00000570771 FAM196BA6NMK8 535 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 TCP10L2B9ZVM9 353 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 RNF113AO15541 343 aaKnown RBP7.72□□□□□ -1.17
VPS53-209ENST00000570771 CHMLP26374 656 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 JAG1P78504 1218 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 RRP1BQ14684 758 aaKnown RBP7.72□□□□□ -1.17
VPS53-209ENST00000570771 C8orf34Q49A92 452 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 DPY19L2Q6NUT2 758 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 HHIPL2Q6UWX4 724 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 KIAA1211Q6ZU35 1233 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 MOB2Q70IA6 237 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 TEKT1Q969V4 418 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 NBPF3Q9H094 633 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 DNAJC18Q9H819 358 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 GPBP1L1Q9HC44 474 aaPredicted RBP7.72□□□□□ -1.17
VPS53-209ENST00000570771 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.72□□□□□ -1.17
VPS53-209ENST00000570771 SUGT1Q9Y2Z0 365 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 SCN4AP35499 1836 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 FLT1P17948 1338 aa7.72□□□□□ -1.17
VPS53-209ENST00000570771 PCNTO95613 3336 aa7.71□□□□□ -1.17
VPS53-209ENST00000570771 CDK5RAP2Q96SN8 1893 aa7.71□□□□□ -1.18
VPS53-209ENST00000570771 GPAA1O43292 621 aa7.71□□□□□ -1.18
VPS53-209ENST00000570771 EPB41L2O43491 1005 aaKnown RBP7.71□□□□□ -1.18
VPS53-209ENST00000570771 ITGBL1O95965 494 aaPredicted RBP7.71□□□□□ -1.18
VPS53-209ENST00000570771 VEGFAP15692 232 aaPredicted RBP7.71□□□□□ -1.18
VPS53-209ENST00000570771 RBM5P52756 815 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS53-209ENST00000570771 HTRA3P83110 453 aa7.71□□□□□ -1.18
VPS53-209ENST00000570771 HDLBPQ00341 1268 aaKnown RBP7.71□□□□□ -1.18
VPS53-209ENST00000570771 PTH1RQ03431 593 aa7.71□□□□□ -1.18
VPS53-209ENST00000570771 TCP10Q12799 353 aa7.71□□□□□ -1.18
VPS53-209ENST00000570771 UBE3CQ15386 1083 aa7.71□□□□□ -1.18
VPS53-209ENST00000570771 DLGAP5Q15398 846 aa7.71□□□□□ -1.18
VPS53-209ENST00000570771 USP48Q86UV5 1035 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms