RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 MAPK8IP1Q9UQF2 711 aa16.57■□□□□ 0.24
VPS35-210ENST00000568784 DHX8Q14562 1220 aaKnown RBP16.56■□□□□ 0.24
VPS35-210ENST00000568784 METTL16Q86W50 562 aaKnown RBP16.56■□□□□ 0.24
VPS35-210ENST00000568784 ZCRB1Q8TBF4 217 aaKnown RBP16.56■□□□□ 0.24
VPS35-210ENST00000568784 WWC3Q9ULE0 1092 aa16.56■□□□□ 0.24
VPS35-210ENST00000568784 KIF5CO60282 957 aa16.56■□□□□ 0.24
VPS35-210ENST00000568784 PRR29P0C7W0 189 aa16.56■□□□□ 0.24
VPS35-210ENST00000568784 HNRNPH2P55795 449 aaKnown RBP16.56■□□□□ 0.24
VPS35-210ENST00000568784 FILIP1LQ4L180 1135 aa16.56■□□□□ 0.24
VPS35-210ENST00000568784 MFSD6Q6ZSS7 791 aa16.56■□□□□ 0.24
VPS35-210ENST00000568784 LRP2BPQ9P2M1 347 aa16.56■□□□□ 0.24
VPS35-210ENST00000568784 DACH1Q9UI36 760 aa16.56■□□□□ 0.24
VPS35-210ENST00000568784 SALL1Q9NSC2 1324 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 ANKRD18BA2A2Z9 1011 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 MCAMP43121 646 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 PHKA1P46020 1223 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 SMC1AQ14683 1233 aaKnown RBP16.55■□□□□ 0.24
VPS35-210ENST00000568784 RTN1Q16799 776 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 JAKMIP3Q5VZ66 844 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 SPECC1LQ69YQ0 1117 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 SOWAHDA6NJG2 315 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 IKBKBO14920 756 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 ZMYM6O95789 1325 aa16.55■□□□□ 0.24
VPS35-210ENST00000568784 SRRTQ9BXP5 876 aaKnown RBP16.55■□□□□ 0.24
VPS35-210ENST00000568784 CUTAO60888 179 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 GUCY1A2P33402 732 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 WTAPQ15007 396 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 GREM2Q9H772 168 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 FHOD1Q9Y613 1164 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 PALLDQ8WX93 1383 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 IGSF22Q8N9C0 903 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 PCMTD1Q96MG8 357 aaPredicted RBP16.54■□□□□ 0.24
VPS35-210ENST00000568784 L2HGDHQ9H9P8 463 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 NCAPD2Q15021 1401 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 CCDC175P0C221 793 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 FAM193AP78312 1265 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 HSP90B2PQ58FF3 399 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 USP49Q70CQ1 688 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 DNAJC10Q8IXB1 793 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 GOLGA1Q92805 767 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 MPHOSPH8Q99549 860 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 NUP88Q99567 741 aaPredicted RBP16.54■□□□□ 0.24
VPS35-210ENST00000568784 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.54■□□□□ 0.24
VPS35-210ENST00000568784 AGXT2Q9BYV1 514 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 PIH1D3Q9NQM4 214 aaKnown RBP16.54■□□□□ 0.24
VPS35-210ENST00000568784 VPS18Q9P253 973 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 PLA2G4AP47712 749 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 ST5P78524 1137 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 FMR1Q06787 632 aaKnown RBP eCLIP16.54■□□□□ 0.243e-7■□□□□ 8.4
VPS35-210ENST00000568784 FOXP4Q8IVH2 680 aaPredicted RBP16.54■□□□□ 0.24
VPS35-210ENST00000568784 PARD6BQ9BYG5 372 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 RAI14Q9P0K7 980 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 MAN1B1Q9UKM7 699 aa16.54■□□□□ 0.24
VPS35-210ENST00000568784 EFCAB8A8MWE9 144 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 PRKAB2O43741 272 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 PRDM1O75626 825 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 TMOD3Q9NYL9 352 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 PCDHB6Q9Y5E3 794 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 RANBP6O60518 1105 aaKnown RBP16.53■□□□□ 0.24
VPS35-210ENST00000568784 CASP7P55210 303 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 NOSTRINQ8IVI9 506 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 AK7Q96M32 723 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 SLC4A4Q9Y6R1 1079 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 TADA3O75528 432 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 H2AFXP16104 143 aaPredicted RBP16.53■□□□□ 0.24
VPS35-210ENST00000568784 PDE6AP16499 860 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 WWC2Q6AWC2 1192 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 GPIHBP1Q8IV16 184 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 NKX2-3Q8TAU0 364 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 VPS16Q9H269 839 aa16.53■□□□□ 0.24
VPS35-210ENST00000568784 NEDD4P46934 1319 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 AKR1B15C9JRZ8 316 aaPredicted RBP16.52■□□□□ 0.24
VPS35-210ENST00000568784 N4BP3O15049 544 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 NUTM2AQ8IVF1 878 aaPredicted RBP16.52■□□□□ 0.24
VPS35-210ENST00000568784 EEF2KMTQ96G04 330 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 HINFPQ9BQA5 517 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 NACAP1Q9BZK3 213 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 VPS54Q9P1Q0 977 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 PHLPP2Q6ZVD8 1323 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 UBR1Q8IWV7 1749 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 NALCNQ8IZF0 1738 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 MAP3K12Q12852 859 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 ZNF174Q15697 407 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 C10orf67Q8IYJ2 551 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 C19orf44Q9H6X5 657 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 GPR108Q9NPR9 543 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 ZSWIM5Q9P217 1185 aa16.52■□□□□ 0.24
VPS35-210ENST00000568784 HEG1Q9ULI3 1381 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 VWA3AA6NCI4 1184 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 SH2B2O14492 632 aaPredicted RBP16.52■□□□□ 0.23
VPS35-210ENST00000568784 TEX33O43247 280 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 CHMP4BP1P59074 171 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 REXO1L1PQ8IX06 675 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 WASF1Q92558 559 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 GDAP1L1Q96MZ0 367 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 BLZF1Q9H2G9 400 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 PARP3Q9Y6F1 533 aa16.52■□□□□ 0.23
VPS35-210ENST00000568784 KDM6AO15550 1401 aaPredicted RBP16.52■□□□□ 0.23
VPS35-210ENST00000568784 TFRCP02786 760 aaKnown RBP16.51■□□□□ 0.23
VPS35-210ENST00000568784 GOLGA6L1Q8N7Z2 621 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms