RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 CTGFP29279 349 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 SNAPC2Q13487 334 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 SPDYE2Q495Y8 402 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 VPS37DQ86XT2 251 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 TDRD7Q8NHU6 1098 aaKnown RBP17.14■□□□□ 0.33
CLN3-235ENST00000568497 TEPSINQ96N21 525 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 NEUROD6Q96NK8 337 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 TMEM39BQ9GZU3 492 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 TDRD3Q9H7E2 651 aaKnown RBP17.14■□□□□ 0.33
CLN3-235ENST00000568497 ZNF70Q9UC06 446 aaPredicted RBP17.14■□□□□ 0.33
CLN3-235ENST00000568497 HDAC5Q9UQL6 1122 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 A0A1B0GUL7 405 aa17.13■□□□□ 0.33
CLN3-235ENST00000568497 IFIT1P09914 478 aaKnown RBP17.13■□□□□ 0.33
CLN3-235ENST00000568497 TNNI2P48788 182 aa17.13■□□□□ 0.33
CLN3-235ENST00000568497 GPR153Q6NV75 609 aa17.13■□□□□ 0.33
CLN3-235ENST00000568497 UNC93B1Q9H1C4 597 aa17.13■□□□□ 0.33
CLN3-235ENST00000568497 TLR7Q9NYK1 1049 aaKnown RBP17.13■□□□□ 0.33
CLN3-235ENST00000568497 PCDHB15Q9Y5E8 787 aa17.13■□□□□ 0.33
CLN3-235ENST00000568497 IRF6O14896 467 aa17.12■□□□□ 0.33
CLN3-235ENST00000568497 SGPL1O95470 568 aa17.12■□□□□ 0.33
CLN3-235ENST00000568497 C17orf99Q6UX52 265 aa17.12■□□□□ 0.33
CLN3-235ENST00000568497 PI16Q6UXB8 463 aa17.12■□□□□ 0.33
CLN3-235ENST00000568497 ERO1BQ86YB8 467 aa17.12■□□□□ 0.33
CLN3-235ENST00000568497 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLN3-235ENST00000568497 LPIN2Q92539 896 aa17.12■□□□□ 0.33
CLN3-235ENST00000568497 XAGE2Q96GT9 111 aa17.12■□□□□ 0.33
CLN3-235ENST00000568497 CCDC8Q9H0W5 538 aaPredicted RBP17.12■□□□□ 0.33
CLN3-235ENST00000568497 IL1RAPL2Q9NP60 686 aa17.12■□□□□ 0.33
CLN3-235ENST00000568497 UNC80Q8N2C7 3258 aa17.11■□□□□ 0.33
CLN3-235ENST00000568497 ARAP2Q8WZ64 1704 aa17.11■□□□□ 0.33
CLN3-235ENST00000568497 SMARCA5O60264 1052 aaPredicted RBP17.11■□□□□ 0.33
CLN3-235ENST00000568497 FRAT2O75474 233 aaPredicted RBP17.11■□□□□ 0.33
CLN3-235ENST00000568497 TFRCP02786 760 aaKnown RBP17.11■□□□□ 0.33
CLN3-235ENST00000568497 PRKCZQ05513 592 aa17.11■□□□□ 0.33
CLN3-235ENST00000568497 SLAIN1Q8ND83 568 aa17.11■□□□□ 0.33
CLN3-235ENST00000568497 WRNIP1Q96S55 665 aa17.11■□□□□ 0.33
CLN3-235ENST00000568497 DBNDD2Q9BQY9 259 aa17.11■□□□□ 0.33
CLN3-235ENST00000568497 MTMR10Q9NXD2 777 aa17.11■□□□□ 0.33
CLN3-235ENST00000568497 SNCAIPQ9Y6H5 919 aa17.11■□□□□ 0.33
CLN3-235ENST00000568497 CAVIN4Q5BKX8 364 aa17.1■□□□□ 0.33
CLN3-235ENST00000568497 MFSD14BQ5SR56 506 aa17.1■□□□□ 0.33
CLN3-235ENST00000568497 C7orf61Q8IZ16 206 aa17.1■□□□□ 0.33
CLN3-235ENST00000568497 EXOC6Q8TAG9 804 aa17.1■□□□□ 0.33
CLN3-235ENST00000568497 SERPINA10Q9UK55 444 aa17.1■□□□□ 0.33
CLN3-235ENST00000568497 ZMYND8Q9ULU4 1186 aaPredicted RBP17.1■□□□□ 0.33
CLN3-235ENST00000568497 TTF2Q9UNY4 1162 aaKnown RBP17.1■□□□□ 0.33
CLN3-235ENST00000568497 CAPN2P17655 700 aa17.09■□□□□ 0.33
CLN3-235ENST00000568497 PPIL2Q13356 520 aa17.09■□□□□ 0.33
CLN3-235ENST00000568497 CCDC102BQ68D86 513 aa17.09■□□□□ 0.33
CLN3-235ENST00000568497 ZKSCAN4Q969J2 545 aaPredicted RBP17.09■□□□□ 0.33
CLN3-235ENST00000568497 DEFB118Q96PH6 123 aa17.09■□□□□ 0.33
CLN3-235ENST00000568497 SNRKQ9NRH2 765 aa17.09■□□□□ 0.33
CLN3-235ENST00000568497 NDUFB9Q9Y6M9 179 aa17.09■□□□□ 0.33
CLN3-235ENST00000568497 FAM205AQ6ZU69 1335 aa17.08■□□□□ 0.32
CLN3-235ENST00000568497 PDHXO00330 501 aa17.08■□□□□ 0.32
CLN3-235ENST00000568497 BMP8BP34820 402 aa17.08■□□□□ 0.32
CLN3-235ENST00000568497 FCGRTP55899 365 aa17.08■□□□□ 0.32
CLN3-235ENST00000568497 TNNI3KQ59H18 835 aa17.08■□□□□ 0.32
CLN3-235ENST00000568497 EAF2Q96CJ1 260 aaPredicted RBP17.08■□□□□ 0.32
CLN3-235ENST00000568497 PAWRQ96IZ0 340 aaKnown RBP17.08■□□□□ 0.32
CLN3-235ENST00000568497 GDF15Q99988 308 aa17.08■□□□□ 0.32
CLN3-235ENST00000568497 NOP58Q9Y2X3 529 aaKnown RBP17.08■□□□□ 0.32
CLN3-235ENST00000568497 FPGT-TNNI3KV9GXZ4 949 aa17.08■□□□□ 0.32
CLN3-235ENST00000568497 ALPK3Q96L96 1907 aa17.08■□□□□ 0.32
CLN3-235ENST00000568497 ADCY3O60266 1144 aa17.07■□□□□ 0.32
CLN3-235ENST00000568497 RASGRF1Q13972 1273 aa17.07■□□□□ 0.32
CLN3-235ENST00000568497 TBC1D9Q6ZT07 1266 aa17.07■□□□□ 0.32
CLN3-235ENST00000568497 FBXO3Q9UK99 471 aa17.07■□□□□ 0.32
CLN3-235ENST00000568497 INHAP05111 366 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 ELNP15502 786 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 SYN1P17600 705 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 NECAB2Q7Z6G3 386 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 ANKRD23Q86SG2 305 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 TDHQ8IZJ6 230 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 DBNLQ9UJU6 430 aaKnown RBP17.06■□□□□ 0.32
CLN3-235ENST00000568497 TAOK2Q9UL54 1235 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 GABRQQ9UN88 632 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 MYH13Q9UKX3 1938 aa17.06■□□□□ 0.32
CLN3-235ENST00000568497 ADGRA2Q96PE1 1338 aa17.05■□□□□ 0.32
CLN3-235ENST00000568497 CACNB3P54284 484 aa17.05■□□□□ 0.32
CLN3-235ENST00000568497 LRIT3Q3SXY7 679 aa17.05■□□□□ 0.32
CLN3-235ENST00000568497 GORABQ5T7V8 394 aa17.05■□□□□ 0.32
CLN3-235ENST00000568497 AACSQ86V21 672 aa17.05■□□□□ 0.32
CLN3-235ENST00000568497 RPAP2Q8IXW5 612 aaPredicted RBP17.05■□□□□ 0.32
CLN3-235ENST00000568497 MGAMO43451 1857 aa17.05■□□□□ 0.32
CLN3-235ENST00000568497 PRDX5P30044 214 aa17.04■□□□□ 0.32
CLN3-235ENST00000568497 CRKP46108 304 aa17.04■□□□□ 0.32
CLN3-235ENST00000568497 PPATQ06203 517 aa17.04■□□□□ 0.32
CLN3-235ENST00000568497 DIXDC1Q155Q3 683 aa17.04■□□□□ 0.32
CLN3-235ENST00000568497 RHPN1Q8TCX5 695 aa17.04■□□□□ 0.32
CLN3-235ENST00000568497 DIS3LQ8TF46 1054 aaKnown RBP17.04■□□□□ 0.32
CLN3-235ENST00000568497 PARK7Q99497 189 aaKnown RBP17.04■□□□□ 0.32
CLN3-235ENST00000568497 AKAP2Q9Y2D5 859 aa17.04■□□□□ 0.32
CLN3-235ENST00000568497 MCAMP43121 646 aa17.03■□□□□ 0.32
CLN3-235ENST00000568497 MAGEA10P43363 369 aaPredicted RBP17.03■□□□□ 0.32
CLN3-235ENST00000568497 FLT3LGP49771 235 aa17.03■□□□□ 0.32
CLN3-235ENST00000568497 HOOK2Q96ED9 719 aa17.03■□□□□ 0.32
CLN3-235ENST00000568497 UBE2OQ9C0C9 1292 aaKnown RBP17.03■□□□□ 0.32
CLN3-235ENST00000568497 TMOD2Q9NZR1 351 aa17.03■□□□□ 0.32
CLN3-235ENST00000568497 HMG20BQ9P0W2 317 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms