RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ARMC9Q7Z3E5 817 aa11.91□□□□□ -0.5
CLK3-220ENST00000567992 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLK3-220ENST00000567992 RIOK1Q9BRS2 568 aaKnown RBP11.91□□□□□ -0.5
CLK3-220ENST00000567992 ZNF532Q9HCE3 1301 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 MYH1P12882 1939 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 DDTLA6NHG4 134 aaPredicted RBP11.9□□□□□ -0.5
CLK3-220ENST00000567992 PPP1R12BO60237 982 aaPredicted RBP11.9□□□□□ -0.5
CLK3-220ENST00000567992 SLURP2P0DP57 97 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 ZNF157P51786 506 aaPredicted RBP11.9□□□□□ -0.5
CLK3-220ENST00000567992 NUCB1Q02818 461 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 GRM1Q13255 1194 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 PICALMQ13492 652 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 SLC9C2Q5TAH2 1124 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.9□□□□□ -0.5
CLK3-220ENST00000567992 TEX11Q8IYF3 940 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 MIGA1Q8NAN2 632 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 GPATCH3Q96I76 525 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 CLMNQ96JQ2 1002 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 OSBPL5Q9H0X9 879 aaPredicted RBP11.9□□□□□ -0.5
CLK3-220ENST00000567992 STAP2Q9UGK3 403 aa11.9□□□□□ -0.5
CLK3-220ENST00000567992 FLT1P17948 1338 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 DOCK1Q14185 1865 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 UNCXA6NJT0 531 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 BAG3O95817 575 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 ADD2P35612 726 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 MAP2K2P36507 400 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 IREB2P48200 963 aaKnown RBP11.89□□□□□ -0.51
CLK3-220ENST00000567992 NOGQ13253 232 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 B4GALNT3Q6L9W6 998 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 CCDC102AQ96A19 550 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 LNPKQ9C0E8 428 aa11.89□□□□□ -0.51
CLK3-220ENST00000567992 ATAD5Q96QE3 1844 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 GLRX3O76003 335 aaKnown RBP11.88□□□□□ -0.51
CLK3-220ENST00000567992 PLCG2P16885 1265 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 GJA5P36382 358 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 PDE1AP54750 535 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 MAP3K10Q02779 954 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 VGLL4Q14135 290 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 MIGA2Q7L4E1 593 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 CHD1LQ86WJ1 897 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 ANKRD13AQ8IZ07 590 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 KBTBD3Q8NAB2 608 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 CSRNP1Q96S65 589 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 NOL10Q9BSC4 688 aaKnown RBP11.88□□□□□ -0.51
CLK3-220ENST00000567992 WBP1LQ9NX94 342 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 ZNF112Q9UJU3 913 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 SNCAIPQ9Y6H5 919 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 PHIPQ8WWQ0 1821 aa11.88□□□□□ -0.51
CLK3-220ENST00000567992 ERC2O15083 957 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 HSPA1AP0DMV8 641 aaKnown RBP11.87□□□□□ -0.51
CLK3-220ENST00000567992 HSPA1BP0DMV9 641 aaKnown RBP11.87□□□□□ -0.51
CLK3-220ENST00000567992 KIF23Q02241 960 aaPredicted RBP11.87□□□□□ -0.51
CLK3-220ENST00000567992 UBE3CQ15386 1083 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 SPRYD7Q5W111 196 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 DCAF15Q66K64 600 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 CERS3Q8IU89 383 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 MAPKAPK5Q8IW41 473 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 LCORLQ8N3X6 602 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 TGFBRAP1Q8WUH2 860 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 HOOK2Q96ED9 719 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 WNK4Q96J92 1243 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 ZNF341Q9BYN7 854 aa11.87□□□□□ -0.51
CLK3-220ENST00000567992 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLK3-220ENST00000567992 BAZ2AQ9UIF9 1905 aaKnown RBP11.86□□□□□ -0.51
CLK3-220ENST00000567992 MAGEB6P1A0A0J9YX57 407 aa11.86□□□□□ -0.51
CLK3-220ENST00000567992 PHF20L1A8MW92 1017 aa11.86□□□□□ -0.51
CLK3-220ENST00000567992 INPP5BP32019 993 aa11.86□□□□□ -0.51
CLK3-220ENST00000567992 MAP3K9P80192 1104 aa11.86□□□□□ -0.51
CLK3-220ENST00000567992 PLEKHM2Q8IWE5 1019 aa11.86□□□□□ -0.51
CLK3-220ENST00000567992 CNKSR2Q8WXI2 1034 aa11.86□□□□□ -0.51
CLK3-220ENST00000567992 ZKSCAN4Q969J2 545 aaPredicted RBP11.86□□□□□ -0.51
CLK3-220ENST00000567992 WRNIP1Q96S55 665 aa11.86□□□□□ -0.51
CLK3-220ENST00000567992 ELP3Q9H9T3 547 aa11.86□□□□□ -0.51
CLK3-220ENST00000567992 FAM196BA6NMK8 535 aa11.85□□□□□ -0.51
CLK3-220ENST00000567992 TBC1D12O60347 775 aa11.85□□□□□ -0.51
CLK3-220ENST00000567992 MBD4O95243 580 aa11.85□□□□□ -0.51
CLK3-220ENST00000567992 CENPBP07199 599 aaPredicted RBP11.85□□□□□ -0.51
CLK3-220ENST00000567992 ZBTB48P10074 688 aaPredicted RBP11.85□□□□□ -0.51
CLK3-220ENST00000567992 PDE4AP27815 886 aa11.85□□□□□ -0.51
CLK3-220ENST00000567992 MKRN3Q13064 507 aaKnown RBP11.85□□□□□ -0.51
CLK3-220ENST00000567992 NOL9Q5SY16 702 aaKnown RBP11.85□□□□□ -0.51
CLK3-220ENST00000567992 METTL16Q86W50 562 aaKnown RBP11.85□□□□□ -0.51
CLK3-220ENST00000567992 ZSCAN29Q8IWY8 852 aaPredicted RBP11.85□□□□□ -0.51
CLK3-220ENST00000567992 PUS7LQ9H0K6 701 aaKnown RBP11.85□□□□□ -0.51
CLK3-220ENST00000567992 OSBPL3Q9H4L5 887 aa11.85□□□□□ -0.51
CLK3-220ENST00000567992 DNAJC18Q9H819 358 aa11.85□□□□□ -0.51
CLK3-220ENST00000567992 ARMT1Q9H993 441 aa11.85□□□□□ -0.51
CLK3-220ENST00000567992 ZBTB47Q9UFB7 747 aaPredicted RBP11.85□□□□□ -0.51
CLK3-220ENST00000567992 PTPRFP10586 1907 aa11.85□□□□□ -0.51
CLK3-220ENST00000567992 SPDYE5A6NIY4 337 aa11.84□□□□□ -0.51
CLK3-220ENST00000567992 FOXN1O15353 648 aa11.84□□□□□ -0.51
CLK3-220ENST00000567992 RNF113AO15541 343 aaKnown RBP11.84□□□□□ -0.51
CLK3-220ENST00000567992 MAP2K1Q02750 393 aaPredicted RBP11.84□□□□□ -0.51
CLK3-220ENST00000567992 RRP1BQ14684 758 aaKnown RBP11.84□□□□□ -0.51
CLK3-220ENST00000567992 ZSCAN25Q6NSZ9 544 aa11.84□□□□□ -0.51
CLK3-220ENST00000567992 OPTNQ96CV9 577 aa11.84□□□□□ -0.51
CLK3-220ENST00000567992 SLC10A4Q96EP9 437 aa11.84□□□□□ -0.51
CLK3-220ENST00000567992 DHX36Q9H2U1 1008 aaKnown RBP11.84□□□□□ -0.51
CLK3-220ENST00000567992 SAP30BPQ9UHR5 308 aaKnown RBP11.84□□□□□ -0.51
CLK3-220ENST00000567992 PALD1Q9ULE6 856 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms