RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TNPO2O14787 897 aaKnown RBP14.07□□□□□ -0.16
CLN3-226ENST00000567160 HIBADHP31937 336 aaKnown RBP14.07□□□□□ -0.16
CLN3-226ENST00000567160 TAF7LQ5H9L4 462 aa14.07□□□□□ -0.16
CLN3-226ENST00000567160 CHMP3Q9Y3E7 222 aa14.07□□□□□ -0.16
CLN3-226ENST00000567160 AK9Q5TCS8 1911 aa14.07□□□□□ -0.16
CLN3-226ENST00000567160 VCANP13611 3396 aa14.06□□□□□ -0.16
CLN3-226ENST00000567160 NEFLP07196 543 aa14.06□□□□□ -0.16
CLN3-226ENST00000567160 CACNB3P54284 484 aa14.06□□□□□ -0.16
CLN3-226ENST00000567160 CASP7P55210 303 aa14.06□□□□□ -0.16
CLN3-226ENST00000567160 DIS3LQ8TF46 1054 aaKnown RBP14.06□□□□□ -0.16
CLN3-226ENST00000567160 TBC1D22AQ8WUA7 517 aa14.06□□□□□ -0.16
CLN3-226ENST00000567160 NBPF3Q9H094 633 aa14.06□□□□□ -0.16
CLN3-226ENST00000567160 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.06□□□□□ -0.16
CLN3-226ENST00000567160 C9orf78Q9NZ63 289 aaPredicted RBP14.06□□□□□ -0.16
CLN3-226ENST00000567160 CXCL11O14625 94 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 CYP2C8P10632 490 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 SYN1P17600 705 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 INPP5BP32019 993 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 UBE4AQ14139 1066 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 CCDC57Q2TAC2 916 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 FAM109BQ6ICB4 259 aaPredicted RBP14.05□□□□□ -0.16
CLN3-226ENST00000567160 LDHAL6AQ6ZMR3 332 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 FASTKD5Q7L8L6 764 aaKnown RBP14.05□□□□□ -0.16
CLN3-226ENST00000567160 COA7Q96BR5 231 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 ZDHHC15Q96MV8 337 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 MEIS3Q99687 375 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 CNNM1Q9NRU3 951 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 TAOK2Q9UL54 1235 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 MAST3O60307 1309 aa14.05□□□□□ -0.16
CLN3-226ENST00000567160 GYG1P46976 350 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 MOGSQ13724 837 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 MIGA2Q7L4E1 593 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 VPS37DQ86XT2 251 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 EXOC6Q8TAG9 804 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 MRIQ9BWK5 157 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 USP44Q9H0E7 712 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 C11orf49Q9H6J7 331 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 DDX19BQ9UMR2 479 aa14.04□□□□□ -0.16
CLN3-226ENST00000567160 GRM8O00222 908 aa14.03□□□□□ -0.16
CLN3-226ENST00000567160 FRAT2O75474 233 aaPredicted RBP14.03□□□□□ -0.16
CLN3-226ENST00000567160 NBPF7P0C2Y1 421 aaPredicted RBP14.03□□□□□ -0.16
CLN3-226ENST00000567160 NOL9Q5SY16 702 aaKnown RBP14.03□□□□□ -0.16
CLN3-226ENST00000567160 SMCR8Q8TEV9 937 aaPredicted RBP14.03□□□□□ -0.16
CLN3-226ENST00000567160 ZNF112Q9UJU3 913 aa14.03□□□□□ -0.16
CLN3-226ENST00000567160 SLC45A1Q9Y2W3 748 aa14.03□□□□□ -0.16
CLN3-226ENST00000567160 DDX60LQ5H9U9 1706 aaKnown RBP14.03□□□□□ -0.16
CLN3-226ENST00000567160 DOCK3Q8IZD9 2030 aa14.03□□□□□ -0.16
CLN3-226ENST00000567160 UBTFL1P0CB47 393 aaPredicted RBP14.02□□□□□ -0.17
CLN3-226ENST00000567160 GPAT2Q6NUI2 795 aa14.02□□□□□ -0.17
CLN3-226ENST00000567160 FAM84BQ96KN1 310 aaPredicted RBP14.02□□□□□ -0.17
CLN3-226ENST00000567160 HMGCRP04035 888 aa14.01□□□□□ -0.17
CLN3-226ENST00000567160 GNAI3P08754 354 aa14.01□□□□□ -0.17
CLN3-226ENST00000567160 FOXO4P98177 505 aa14.01□□□□□ -0.17
CLN3-226ENST00000567160 CHAF1AQ13111 956 aaPredicted RBP14.01□□□□□ -0.17
CLN3-226ENST00000567160 FAM151AQ8WW52 585 aa14.01□□□□□ -0.17
CLN3-226ENST00000567160 SYMPKQ92797 1274 aaKnown RBP14.01□□□□□ -0.17
CLN3-226ENST00000567160 GUCD1Q96NT3 240 aa14.01□□□□□ -0.17
CLN3-226ENST00000567160 C1orf115Q9H7X2 142 aa14.01□□□□□ -0.17
CLN3-226ENST00000567160 HMX1Q9NP08 348 aaPredicted RBP14.01□□□□□ -0.17
CLN3-226ENST00000567160 SUGT1Q9Y2Z0 365 aa14.01□□□□□ -0.17
CLN3-226ENST00000567160 UTYO14607 1347 aa14□□□□□ -0.17
CLN3-226ENST00000567160 A0A0G2JLL6 359 aaPredicted RBP14□□□□□ -0.17
CLN3-226ENST00000567160 POTEB2H3BUK9 544 aa14□□□□□ -0.17
CLN3-226ENST00000567160 CAVIN4Q5BKX8 364 aa14□□□□□ -0.17
CLN3-226ENST00000567160 ZNF697Q5TEC3 545 aa14□□□□□ -0.17
CLN3-226ENST00000567160 APOBEC3HQ6NTF7 200 aaKnown RBP14□□□□□ -0.17
CLN3-226ENST00000567160 LMBR1LQ6UX01 489 aa14□□□□□ -0.17
CLN3-226ENST00000567160 GADL1Q6ZQY3 521 aa14□□□□□ -0.17
CLN3-226ENST00000567160 PRRT2Q7Z6L0 340 aaPredicted RBP14□□□□□ -0.17
CLN3-226ENST00000567160 SUCLG2Q96I99 432 aa14□□□□□ -0.17
CLN3-226ENST00000567160 PICK1Q9NRD5 415 aa14□□□□□ -0.17
CLN3-226ENST00000567160 LRRFIP2Q9Y608 721 aaKnown RBP14□□□□□ -0.17
CLN3-226ENST00000567160 GRIK5Q16478 980 aa13.99□□□□□ -0.17
CLN3-226ENST00000567160 HHIPL2Q6UWX4 724 aa13.99□□□□□ -0.17
CLN3-226ENST00000567160 ZNF594Q96JF6 807 aaPredicted RBP13.99□□□□□ -0.17
CLN3-226ENST00000567160 CHMP4BQ9H444 224 aaKnown RBP13.99□□□□□ -0.17
CLN3-226ENST00000567160 ZBTB40Q9NUA8 1239 aa13.99□□□□□ -0.17
CLN3-226ENST00000567160 SPTBN5Q9NRC6 3674 aaKnown RBP13.99□□□□□ -0.17
CLN3-226ENST00000567160 GNAI2P04899 355 aa13.98□□□□□ -0.17
CLN3-226ENST00000567160 FAM161BQ96MY7 647 aa13.98□□□□□ -0.17
CLN3-226ENST00000567160 PNMA3Q9UL41 463 aa13.98□□□□□ -0.17
CLN3-226ENST00000567160 OGDHLQ9ULD0 1010 aa13.98□□□□□ -0.17
CLN3-226ENST00000567160 IQSEC3Q9UPP2 1182 aaPredicted RBP13.98□□□□□ -0.17
CLN3-226ENST00000567160 ZHX2Q9Y6X8 837 aa13.98□□□□□ -0.17
CLN3-226ENST00000567160 PTPRFP10586 1907 aa13.98□□□□□ -0.17
CLN3-226ENST00000567160 TTC28Q96AY4 2481 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 TCP10Q12799 353 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 FAM110CQ1W6H9 321 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 EPHA10Q5JZY3 1008 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 FBXO33Q7Z6M2 555 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 SCYL3Q8IZE3 742 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 ANKRD13CQ8N6S4 541 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 MAFAQ8NHW3 353 aaPredicted RBP13.97□□□□□ -0.17
CLN3-226ENST00000567160 KAZALD1Q96I82 304 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 BICC1Q9H694 974 aaKnown RBP13.97□□□□□ -0.17
CLN3-226ENST00000567160 HDAC5Q9UQL6 1122 aa13.97□□□□□ -0.17
CLN3-226ENST00000567160 COL2A1P02458 1487 aaPredicted RBP13.97□□□□□ -0.17
CLN3-226ENST00000567160 MROH5Q6ZUA9 1318 aa13.96□□□□□ -0.17
CLN3-226ENST00000567160 COL9A1P20849 921 aa13.96□□□□□ -0.17
CLN3-226ENST00000567160 MDM2Q00987 491 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms