RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 LACTBP83111 547 aaPredicted RBP18.34■□□□□ 0.53
CLN3-222ENST00000566083 ATP8B2P98198 1209 aa18.34■□□□□ 0.53
CLN3-222ENST00000566083 MECOMQ03112 1051 aa18.34■□□□□ 0.53
CLN3-222ENST00000566083 CCDC158Q5M9N0 1113 aa18.34■□□□□ 0.53
CLN3-222ENST00000566083 PRPF38BQ5VTL8 546 aaKnown RBP18.34■□□□□ 0.53
CLN3-222ENST00000566083 FASTKD5Q7L8L6 764 aaKnown RBP18.34■□□□□ 0.53
CLN3-222ENST00000566083 SCYL3Q8IZE3 742 aa18.34■□□□□ 0.53
CLN3-222ENST00000566083 TMEM106CQ9BVX2 250 aa18.34■□□□□ 0.53
CLN3-222ENST00000566083 CTNND1O60716 968 aaKnown RBP18.33■□□□□ 0.53
CLN3-222ENST00000566083 HOXD10P28358 340 aa18.33■□□□□ 0.53
CLN3-222ENST00000566083 OS9Q13438 667 aaPredicted RBP18.33■□□□□ 0.53
CLN3-222ENST00000566083 POLA2Q14181 598 aa18.33■□□□□ 0.53
CLN3-222ENST00000566083 SLC9C1Q4G0N8 1177 aa18.33■□□□□ 0.53
CLN3-222ENST00000566083 SSH3Q8TE77 659 aa18.33■□□□□ 0.53
CLN3-222ENST00000566083 PARK7Q99497 189 aaKnown RBP18.33■□□□□ 0.53
CLN3-222ENST00000566083 NOL10Q9BSC4 688 aaKnown RBP18.33■□□□□ 0.53
CLN3-222ENST00000566083 RAI14Q9P0K7 980 aa18.33■□□□□ 0.53
CLN3-222ENST00000566083 RFX7Q2KHR2 1363 aa18.33■□□□□ 0.52
CLN3-222ENST00000566083 PHF20L1A8MW92 1017 aa18.32■□□□□ 0.52
CLN3-222ENST00000566083 PDHXO00330 501 aa18.32■□□□□ 0.52
CLN3-222ENST00000566083 TBC1D12O60347 775 aa18.32■□□□□ 0.52
CLN3-222ENST00000566083 DIEXFQ68CQ4 756 aaKnown RBP18.32■□□□□ 0.52
CLN3-222ENST00000566083 ZFPM1Q8IX07 1006 aa18.32■□□□□ 0.52
CLN3-222ENST00000566083 NSUN4Q96CB9 384 aaKnown RBP18.32■□□□□ 0.52
CLN3-222ENST00000566083 LRP2BPQ9P2M1 347 aa18.32■□□□□ 0.52
CLN3-222ENST00000566083 ATRNL1Q5VV63 1379 aa18.32■□□□□ 0.52
CLN3-222ENST00000566083 C17orf99Q6UX52 265 aa18.32■□□□□ 0.52
CLN3-222ENST00000566083 ZHX2Q9Y6X8 837 aa18.32■□□□□ 0.52
CLN3-222ENST00000566083 SURF6O75683 361 aaKnown RBP18.31■□□□□ 0.52
CLN3-222ENST00000566083 BAG3O95817 575 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 PLCG2P16885 1265 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 PTPRAP18433 802 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 PICALMQ13492 652 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 TTC39AQ5SRH9 613 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 ITPRIPQ8IWB1 547 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 ZNF333Q96JL9 665 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 ZNF512BQ96KM6 892 aaPredicted RBP18.31■□□□□ 0.52
CLN3-222ENST00000566083 TNNQ9UQP3 1299 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 SLC45A1Q9Y2W3 748 aa18.31■□□□□ 0.52
CLN3-222ENST00000566083 DDTLA6NHG4 134 aaPredicted RBP18.3■□□□□ 0.52
CLN3-222ENST00000566083 MS4A1P11836 297 aa18.3■□□□□ 0.52
CLN3-222ENST00000566083 MCAMP43121 646 aa18.3■□□□□ 0.52
CLN3-222ENST00000566083 RHBDL3P58872 404 aa18.3■□□□□ 0.52
CLN3-222ENST00000566083 TNNI3KQ59H18 835 aa18.3■□□□□ 0.52
CLN3-222ENST00000566083 MIER1Q8N108 512 aa18.3■□□□□ 0.52
CLN3-222ENST00000566083 TBC1D2Q9BYX2 928 aa18.3■□□□□ 0.52
CLN3-222ENST00000566083 NOP58Q9Y2X3 529 aaKnown RBP18.3■□□□□ 0.52
CLN3-222ENST00000566083 PTCH2Q9Y6C5 1203 aa18.3■□□□□ 0.52
CLN3-222ENST00000566083 FPGT-TNNI3KV9GXZ4 949 aa18.3■□□□□ 0.52
CLN3-222ENST00000566083 COL2A1P02458 1487 aaPredicted RBP18.29■□□□□ 0.52
CLN3-222ENST00000566083 A0A0G2JLL6 359 aaPredicted RBP18.29■□□□□ 0.52
CLN3-222ENST00000566083 SH3BP5LQ7L8J4 393 aa18.29■□□□□ 0.52
CLN3-222ENST00000566083 PRRT2Q7Z6L0 340 aaPredicted RBP18.29■□□□□ 0.52
CLN3-222ENST00000566083 OSBPL5Q9H0X9 879 aaPredicted RBP18.29■□□□□ 0.52
CLN3-222ENST00000566083 DDX4Q9NQI0 724 aaKnown RBP18.29■□□□□ 0.52
CLN3-222ENST00000566083 AFG3L2Q9Y4W6 797 aa18.29■□□□□ 0.52
CLN3-222ENST00000566083 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.29■□□□□ 0.52
CLN3-222ENST00000566083 ZBED9Q6R2W3 1325 aa18.29■□□□□ 0.52
CLN3-222ENST00000566083 DOCK2Q92608 1830 aa18.28■□□□□ 0.52
CLN3-222ENST00000566083 ZBTB7BO15156 539 aaPredicted RBP18.28■□□□□ 0.52
CLN3-222ENST00000566083 TBC1D9Q6ZT07 1266 aa18.28■□□□□ 0.52
CLN3-222ENST00000566083 DHX36Q9H2U1 1008 aaKnown RBP18.28■□□□□ 0.52
CLN3-222ENST00000566083 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.28■□□□□ 0.52
CLN3-222ENST00000566083 CPA4Q9UI42 421 aa18.28■□□□□ 0.52
CLN3-222ENST00000566083 POTEFA5A3E0 1075 aa18.27■□□□□ 0.52
CLN3-222ENST00000566083 PSMC4P43686 418 aa18.27■□□□□ 0.52
CLN3-222ENST00000566083 CAP1Q01518 475 aa18.27■□□□□ 0.52
CLN3-222ENST00000566083 MOGSQ13724 837 aa18.27■□□□□ 0.52
CLN3-222ENST00000566083 NAA16Q6N069 864 aaPredicted RBP18.27■□□□□ 0.52
CLN3-222ENST00000566083 TMED8Q6PL24 325 aaPredicted RBP18.27■□□□□ 0.52
CLN3-222ENST00000566083 PI16Q6UXB8 463 aa18.27■□□□□ 0.52
CLN3-222ENST00000566083 ZNF384Q8TF68 577 aa18.27■□□□□ 0.52
CLN3-222ENST00000566083 HERC5Q9UII4 1024 aaKnown RBP18.27■□□□□ 0.52
CLN3-222ENST00000566083 FMNL1O95466 1100 aaPredicted RBP18.26■□□□□ 0.51
CLN3-222ENST00000566083 SLC4A8Q2Y0W8 1093 aa18.26■□□□□ 0.51
CLN3-222ENST00000566083 CERS3Q8IU89 383 aa18.26■□□□□ 0.51
CLN3-222ENST00000566083 ERC1Q8IUD2 1116 aa18.26■□□□□ 0.51
CLN3-222ENST00000566083 TEX11Q8IYF3 940 aa18.26■□□□□ 0.51
CLN3-222ENST00000566083 SRRDQ9UH36 339 aa18.26■□□□□ 0.51
CLN3-222ENST00000566083 ADGRA2Q96PE1 1338 aa18.26■□□□□ 0.51
CLN3-222ENST00000566083 RBBP6Q7Z6E9 1792 aaKnown RBP18.26■□□□□ 0.51
CLN3-222ENST00000566083 FCGRTP55899 365 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 PPP4CP60510 307 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 HSP90AB4PQ58FF6 505 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 GPAT2Q6NUI2 795 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 GCC1Q96CN9 775 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 DBNDD2Q9BQY9 259 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 ARHGAP39Q9C0H5 1083 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 PI4KBQ9UBF8 816 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 PNMA3Q9UL41 463 aa18.25■□□□□ 0.51
CLN3-222ENST00000566083 BCRP11274 1271 aa18.24■□□□□ 0.51
CLN3-222ENST00000566083 GADL1Q6ZQY3 521 aa18.24■□□□□ 0.51
CLN3-222ENST00000566083 RAET1EQ8TD07 263 aa18.24■□□□□ 0.51
CLN3-222ENST00000566083 PABPC4Q13310 644 aaKnown RBP eCLIP18.23■□□□□ 0.51
CLN3-222ENST00000566083 PROCA1Q8NCQ7 364 aaPredicted RBP18.23■□□□□ 0.51
CLN3-222ENST00000566083 SMCR8Q8TEV9 937 aaPredicted RBP18.23■□□□□ 0.51
CLN3-222ENST00000566083 TRIM47Q96LD4 638 aa18.23■□□□□ 0.51
CLN3-222ENST00000566083 AS3MTQ9HBK9 375 aa18.23■□□□□ 0.51
CLN3-222ENST00000566083 GINM1Q9NU53 330 aa18.23■□□□□ 0.51
CLN3-222ENST00000566083 HTTP42858 3142 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms