RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 DLC1Q96QB1 1528 aa8□□□□□ -1.13
VPS35-204ENST00000563884 KCNQ2O43526 872 aa8□□□□□ -1.13
VPS35-204ENST00000563884 ATP2B4P23634 1241 aa8□□□□□ -1.13
VPS35-204ENST00000563884 CDC25BP30305 580 aa8□□□□□ -1.13
VPS35-204ENST00000563884 ZBTB39O15060 712 aa7.99□□□□□ -1.13
VPS35-204ENST00000563884 FSTP19883 344 aa7.99□□□□□ -1.13
VPS35-204ENST00000563884 CDC27P30260 824 aa7.99□□□□□ -1.13
VPS35-204ENST00000563884 TXNDC11Q6PKC3 985 aa7.99□□□□□ -1.13
VPS35-204ENST00000563884 NRAPQ86VF7 1730 aa7.99□□□□□ -1.13
VPS35-204ENST00000563884 DDX17Q92841 729 aaKnown RBP7.99□□□□□ -1.13
VPS35-204ENST00000563884 ABCA3Q99758 1704 aa7.99□□□□□ -1.13
VPS35-204ENST00000563884 ABI2Q9NYB9 513 aaPredicted RBP7.99□□□□□ -1.13
VPS35-204ENST00000563884 AMOTL2Q9Y2J4 779 aa7.99□□□□□ -1.13
VPS35-204ENST00000563884 CASZ1Q86V15 1759 aa7.99□□□□□ -1.13
VPS35-204ENST00000563884 SSFA2P28290 1259 aa7.98□□□□□ -1.13
VPS35-204ENST00000563884 VPS72Q15906 364 aa7.98□□□□□ -1.13
VPS35-204ENST00000563884 NCAPG2Q86XI2 1143 aa7.98□□□□□ -1.13
VPS35-204ENST00000563884 GALNT11Q8NCW6 608 aa7.98□□□□□ -1.13
VPS35-204ENST00000563884 RASSF4Q9H2L5 321 aa7.98□□□□□ -1.13
VPS35-204ENST00000563884 CCDC9Q9Y3X0 531 aaKnown RBP7.98□□□□□ -1.13
VPS35-204ENST00000563884 ADGRL2O95490 1459 aa7.98□□□□□ -1.13
VPS35-204ENST00000563884 NPHP3Q7Z494 1330 aa7.98□□□□□ -1.13
VPS35-204ENST00000563884 FAM177BA6PVY3 158 aa7.97□□□□□ -1.13
VPS35-204ENST00000563884 CYP2E1P05181 493 aaPredicted RBP7.97□□□□□ -1.13
VPS35-204ENST00000563884 CD68P34810 354 aaPredicted RBP7.97□□□□□ -1.13
VPS35-204ENST00000563884 FAM117BQ6P1L5 589 aa7.97□□□□□ -1.13
VPS35-204ENST00000563884 ACAD11Q709F0 780 aa7.97□□□□□ -1.13
VPS35-204ENST00000563884 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.97□□□□□ -1.13
VPS35-204ENST00000563884 CARD10Q9BWT7 1032 aa7.97□□□□□ -1.13
VPS35-204ENST00000563884 KIF1AQ12756 1690 aa7.97□□□□□ -1.13
VPS35-204ENST00000563884 LRPPRCP42704 1394 aaKnown RBP7.97□□□□□ -1.13
VPS35-204ENST00000563884 NRXN3Q9Y4C0 1643 aa7.96□□□□□ -1.13
VPS35-204ENST00000563884 THSD7AQ9UPZ6 1657 aa7.96□□□□□ -1.13
VPS35-204ENST00000563884 PXDNQ92626 1479 aa7.96□□□□□ -1.13
VPS35-204ENST00000563884 SHANK3Q9BYB0 1731 aa7.96□□□□□ -1.14
VPS35-204ENST00000563884 Q6ZS46 218 aa7.96□□□□□ -1.14
VPS35-204ENST00000563884 SLC51AQ86UW1 340 aa7.96□□□□□ -1.14
VPS35-204ENST00000563884 NUDT16Q96DE0 195 aaKnown RBP7.96□□□□□ -1.14
VPS35-204ENST00000563884 PBX4Q9BYU1 374 aa7.96□□□□□ -1.14
VPS35-204ENST00000563884 ELP3Q9H9T3 547 aa7.96□□□□□ -1.14
VPS35-204ENST00000563884 PCMTD2Q9NV79 361 aa7.96□□□□□ -1.14
VPS35-204ENST00000563884 RAXQ9Y2V3 346 aa7.96□□□□□ -1.14
VPS35-204ENST00000563884 PTPRUQ92729 1446 aa7.95□□□□□ -1.14
VPS35-204ENST00000563884 KIF4AO95239 1232 aa7.95□□□□□ -1.14
VPS35-204ENST00000563884 WISP1O95388 367 aa7.95□□□□□ -1.14
VPS35-204ENST00000563884 PTPRAP18433 802 aa7.95□□□□□ -1.14
VPS35-204ENST00000563884 EZH2Q15910 746 aaKnown RBP7.95□□□□□ -1.14
VPS35-204ENST00000563884 PHLDB3Q6NSJ2 640 aa7.95□□□□□ -1.14
VPS35-204ENST00000563884 ZNF438Q7Z4V0 828 aa7.95□□□□□ -1.14
VPS35-204ENST00000563884 UBL7Q96S82 380 aaPredicted RBP7.95□□□□□ -1.14
VPS35-204ENST00000563884 SEPT3Q9UH03 358 aa7.95□□□□□ -1.14
VPS35-204ENST00000563884 KIF15Q9NS87 1388 aa7.95□□□□□ -1.14
VPS35-204ENST00000563884 CDC42BPGQ6DT37 1551 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 FSCN2O14926 492 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 PDE12Q6L8Q7 609 aaKnown RBP7.94□□□□□ -1.14
VPS35-204ENST00000563884 ATCAYQ86WG3 371 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 CEP41Q9BYV8 373 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 SH2B1Q9NRF2 756 aaPredicted RBP7.94□□□□□ -1.14
VPS35-204ENST00000563884 KCNK4Q9NYG8 393 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 TMEM63CQ9P1W3 806 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 KANSL3Q9P2N6 904 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 STOML1Q9UBI4 398 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 USTQ9Y2C2 406 aa7.94□□□□□ -1.14
VPS35-204ENST00000563884 UTRNP46939 3433 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 COL14A1Q05707 1796 aaKnown RBP7.93□□□□□ -1.14
VPS35-204ENST00000563884 FAM83GA6ND36 823 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 DHX15O43143 795 aaKnown RBP7.93□□□□□ -1.14
VPS35-204ENST00000563884 HSPA6P17066 643 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 EPHA1P21709 976 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 SSTR4P31391 388 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 PRELPP51888 382 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 DUOXA2Q1HG44 320 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 ADAMTSL4Q6UY14 1074 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 CEP120Q8N960 986 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 KLHL23Q8NBE8 558 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 TTC16Q8NEE8 873 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 CAMKK2Q96RR4 588 aa7.93□□□□□ -1.14
VPS35-204ENST00000563884 GSC2O15499 205 aa7.92□□□□□ -1.14
VPS35-204ENST00000563884 RPLP1P05386 114 aaKnown RBP7.92□□□□□ -1.14
VPS35-204ENST00000563884 PCSK2P16519 638 aa7.92□□□□□ -1.14
VPS35-204ENST00000563884 POP1Q99575 1024 aaKnown RBP7.92□□□□□ -1.14
VPS35-204ENST00000563884 KRTAP9-2Q9BYQ4 174 aa7.92□□□□□ -1.14
VPS35-204ENST00000563884 ABCC5O15440 1437 aa7.92□□□□□ -1.14
VPS35-204ENST00000563884 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.91□□□□□ -1.14
VPS35-204ENST00000563884 IGLV1-40P01703 118 aa7.91□□□□□ -1.14
VPS35-204ENST00000563884 CABP4P57796 275 aa7.91□□□□□ -1.14
VPS35-204ENST00000563884 DNM1Q05193 864 aaKnown RBP7.91□□□□□ -1.14
VPS35-204ENST00000563884 EDEM1Q92611 657 aa7.91□□□□□ -1.14
VPS35-204ENST00000563884 UTP4Q969X6 686 aaKnown RBP7.91□□□□□ -1.14
VPS35-204ENST00000563884 SEC31BQ9NQW1 1179 aa7.91□□□□□ -1.14
VPS35-204ENST00000563884 CNTN3Q9P232 1028 aa7.91□□□□□ -1.14
VPS35-204ENST00000563884 CCDC144AA2RUR9 1427 aa7.9□□□□□ -1.14
VPS35-204ENST00000563884 CARNS1A5YM72 827 aa7.9□□□□□ -1.14
VPS35-204ENST00000563884 DDX3YO15523 660 aaKnown RBP7.9□□□□□ -1.14
VPS35-204ENST00000563884 CES1P23141 567 aa7.9□□□□□ -1.14
VPS35-204ENST00000563884 C8orf34Q49A92 452 aa7.9□□□□□ -1.14
VPS35-204ENST00000563884 FAM196AQ6ZSG2 479 aa7.9□□□□□ -1.14
VPS35-204ENST00000563884 ARMC10Q8N2F6 343 aa7.9□□□□□ -1.14
VPS35-204ENST00000563884 HELQQ8TDG4 1101 aa7.9□□□□□ -1.14
VPS35-204ENST00000563884 KLHDC7BQ96G42 594 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms