RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 GRK4P32298 578 aa20.43■□□□□ 0.86
CLN3-208ENST00000561505 RASGRF1Q13972 1273 aa20.43■□□□□ 0.86
CLN3-208ENST00000561505 FASTKD5Q7L8L6 764 aaKnown RBP20.43■□□□□ 0.86
CLN3-208ENST00000561505 ARHGAP45Q92619 1136 aa20.43■□□□□ 0.86
CLN3-208ENST00000561505 PARK7Q99497 189 aaKnown RBP20.43■□□□□ 0.86
CLN3-208ENST00000561505 TBC1D12O60347 775 aa20.42■□□□□ 0.86
CLN3-208ENST00000561505 GJB1P08034 283 aa20.42■□□□□ 0.86
CLN3-208ENST00000561505 GJA8P48165 433 aa20.42■□□□□ 0.86
CLN3-208ENST00000561505 NKX2-3Q8TAU0 364 aa20.42■□□□□ 0.86
CLN3-208ENST00000561505 ZNF384Q8TF68 577 aa20.42■□□□□ 0.86
CLN3-208ENST00000561505 MEIS3Q99687 375 aa20.42■□□□□ 0.86
CLN3-208ENST00000561505 DDX4Q9NQI0 724 aaKnown RBP20.42■□□□□ 0.86
CLN3-208ENST00000561505 COLQQ9Y215 455 aaPredicted RBP20.42■□□□□ 0.86
CLN3-208ENST00000561505 ZHX2Q9Y6X8 837 aa20.42■□□□□ 0.86
CLN3-208ENST00000561505 CEP290O15078 2479 aa20.41■□□□□ 0.86
CLN3-208ENST00000561505 GPR75-ASB3A0A0A6YYF3 556 aa20.41■□□□□ 0.86
CLN3-208ENST00000561505 DDTLA6NHG4 134 aaPredicted RBP20.41■□□□□ 0.86
CLN3-208ENST00000561505 CTNND1O60716 968 aaKnown RBP20.41■□□□□ 0.86
CLN3-208ENST00000561505 RHBDL3P58872 404 aa20.41■□□□□ 0.86
CLN3-208ENST00000561505 TIMM10P62072 90 aa20.41■□□□□ 0.86
CLN3-208ENST00000561505 SLF2Q8IX21 1173 aa20.41■□□□□ 0.86
CLN3-208ENST00000561505 DOCK2Q92608 1830 aa20.41■□□□□ 0.86
CLN3-208ENST00000561505 MYH2Q9UKX2 1941 aa20.41■□□□□ 0.86
CLN3-208ENST00000561505 FMNL1O95466 1100 aaPredicted RBP20.4■□□□□ 0.86
CLN3-208ENST00000561505 MAP4K4O95819 1239 aaPredicted RBP20.4■□□□□ 0.86
CLN3-208ENST00000561505 CYP2C8P10632 490 aa20.4■□□□□ 0.86
CLN3-208ENST00000561505 CAPN2P17655 700 aa20.4■□□□□ 0.86
CLN3-208ENST00000561505 SPTY2D1Q68D10 685 aaPredicted RBP20.4■□□□□ 0.86
CLN3-208ENST00000561505 MYPNQ86TC9 1320 aa20.4■□□□□ 0.86
CLN3-208ENST00000561505 COL2A1P02458 1487 aaPredicted RBP20.39■□□□□ 0.85
CLN3-208ENST00000561505 H0YGN5 161 aa20.39■□□□□ 0.85
CLN3-208ENST00000561505 RARSP54136 660 aaKnown RBP20.39■□□□□ 0.85
CLN3-208ENST00000561505 RAET1EQ8TD07 263 aa20.39■□□□□ 0.85
CLN3-208ENST00000561505 AKAP2Q9Y2D5 859 aa20.39■□□□□ 0.85
CLN3-208ENST00000561505 AK9Q5TCS8 1911 aa20.39■□□□□ 0.85
CLN3-208ENST00000561505 PHIPQ8WWQ0 1821 aa20.39■□□□□ 0.85
CLN3-208ENST00000561505 MROH7-TTC4A0A0A0MT08 1334 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 PTPRFP10586 1907 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 A0A1B0GUL7 405 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 CCL5P13501 91 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 FCGRTP55899 365 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 PRKCZQ05513 592 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 IRF5Q13568 498 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 SLAIN1Q8ND83 568 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 PXYLP1Q8TE99 480 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 XAGE2Q96GT9 111 aa20.38■□□□□ 0.85
CLN3-208ENST00000561505 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.38■□□□□ 0.85
CLN3-208ENST00000561505 MYCP01106 439 aaPredicted RBP20.37■□□□□ 0.85
CLN3-208ENST00000561505 GNAI3P08754 354 aa20.37■□□□□ 0.85
CLN3-208ENST00000561505 BTDP43251 543 aa20.37■□□□□ 0.85
CLN3-208ENST00000561505 MECOMQ03112 1051 aa20.37■□□□□ 0.85
CLN3-208ENST00000561505 MVPQ14764 893 aaKnown RBP20.37■□□□□ 0.85
CLN3-208ENST00000561505 PRO3102Q9H379 93 aa20.37■□□□□ 0.85
CLN3-208ENST00000561505 PICK1Q9NRD5 415 aa20.37■□□□□ 0.85
CLN3-208ENST00000561505 GABRQQ9UN88 632 aa20.37■□□□□ 0.85
CLN3-208ENST00000561505 MGAMO43451 1857 aa20.37■□□□□ 0.85
CLN3-208ENST00000561505 SLURP2P0DP57 97 aa20.36■□□□□ 0.85
CLN3-208ENST00000561505 TFCP2Q12800 502 aa20.36■□□□□ 0.85
CLN3-208ENST00000561505 DZIP1Q86YF9 867 aaKnown RBP20.36■□□□□ 0.85
CLN3-208ENST00000561505 ABCF2Q9UG63 623 aa20.36■□□□□ 0.85
CLN3-208ENST00000561505 DOCK1Q14185 1865 aa20.35■□□□□ 0.85
CLN3-208ENST00000561505 UBXN2AP68543 259 aa20.35■□□□□ 0.85
CLN3-208ENST00000561505 NSUN4Q96CB9 384 aaKnown RBP20.35■□□□□ 0.85
CLN3-208ENST00000561505 HMG20BQ9P0W2 317 aa20.35■□□□□ 0.85
CLN3-208ENST00000561505 SRGAP3O43295 1099 aa20.34■□□□□ 0.85
CLN3-208ENST00000561505 ARID4AP29374 1257 aaPredicted RBP20.34■□□□□ 0.85
CLN3-208ENST00000561505 ERICH6Q7L0X2 663 aa20.34■□□□□ 0.85
CLN3-208ENST00000561505 RNF208Q9H0X6 261 aa20.34■□□□□ 0.85
CLN3-208ENST00000561505 OSBPL5Q9H0X9 879 aaPredicted RBP20.34■□□□□ 0.85
CLN3-208ENST00000561505 AGTPBP1Q9UPW5 1226 aa20.34■□□□□ 0.85
CLN3-208ENST00000561505 TRIOBPQ9H2D6 2365 aa20.34■□□□□ 0.85
CLN3-208ENST00000561505 SGPL1O95470 568 aa20.33■□□□□ 0.85
CLN3-208ENST00000561505 FLT3LGP49771 235 aa20.33■□□□□ 0.85
CLN3-208ENST00000561505 ZSCAN29Q8IWY8 852 aaPredicted RBP20.33■□□□□ 0.85
CLN3-208ENST00000561505 PROCA1Q8NCQ7 364 aaPredicted RBP20.33■□□□□ 0.85
CLN3-208ENST00000561505 U2AF1L4Q8WU68 220 aaKnown RBP20.33■□□□□ 0.85
CLN3-208ENST00000561505 TBC1D2Q9BYX2 928 aa20.33■□□□□ 0.85
CLN3-208ENST00000561505 ADCY3O60266 1144 aa20.32■□□□□ 0.84
CLN3-208ENST00000561505 LDHCP07864 332 aa20.32■□□□□ 0.84
CLN3-208ENST00000561505 GADL1Q6ZQY3 521 aa20.32■□□□□ 0.84
CLN3-208ENST00000561505 SPATA5Q8NB90 893 aa20.32■□□□□ 0.84
CLN3-208ENST00000561505 ECM2O94769 699 aaPredicted RBP20.31■□□□□ 0.84
CLN3-208ENST00000561505 FAM110CQ1W6H9 321 aa20.31■□□□□ 0.84
CLN3-208ENST00000561505 SH3D19Q5HYK7 790 aa20.31■□□□□ 0.84
CLN3-208ENST00000561505 HTATIP2Q9BUP3 242 aa20.31■□□□□ 0.84
CLN3-208ENST00000561505 CRISPLD2Q9H0B8 497 aa20.31■□□□□ 0.84
CLN3-208ENST00000561505 UNC93B1Q9H1C4 597 aa20.31■□□□□ 0.84
CLN3-208ENST00000561505 PAK6Q9NQU5 681 aaPredicted RBP20.31■□□□□ 0.84
CLN3-208ENST00000561505 RANBP2P49792 3224 aaKnown RBP20.31■□□□□ 0.84
CLN3-208ENST00000561505 IGSF3O75054 1194 aa20.3■□□□□ 0.84
CLN3-208ENST00000561505 GSTO1P78417 241 aa20.3■□□□□ 0.84
CLN3-208ENST00000561505 PICALMQ13492 652 aa20.3■□□□□ 0.84
CLN3-208ENST00000561505 RRP1BQ14684 758 aaKnown RBP20.3■□□□□ 0.84
CLN3-208ENST00000561505 METTL16Q86W50 562 aaKnown RBP20.3■□□□□ 0.84
CLN3-208ENST00000561505 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.3■□□□□ 0.84
CLN3-208ENST00000561505 TRIM75PA6NK02 468 aa20.29■□□□□ 0.84
CLN3-208ENST00000561505 CAP2P40123 477 aa20.29■□□□□ 0.84
CLN3-208ENST00000561505 TREML2Q5T2D2 321 aa20.29■□□□□ 0.84
CLN3-208ENST00000561505 PI16Q6UXB8 463 aa20.29■□□□□ 0.84
CLN3-208ENST00000561505 CCDC84Q86UT8 332 aaPredicted RBP20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms