RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 PLCL1Q15111 1095 aa7.8□□□□□ -1.16
VPS13C-210ENST00000561258 TMC1Q8TDI8 760 aa7.8□□□□□ -1.16
VPS13C-210ENST00000561258 SREK1Q8WXA9 508 aaKnown RBP7.8□□□□□ -1.16
VPS13C-210ENST00000561258 ZFYVE1Q9HBF4 777 aa7.8□□□□□ -1.16
VPS13C-210ENST00000561258 SCAMP3O14828 347 aaKnown RBP7.79□□□□□ -1.16
VPS13C-210ENST00000561258 MAPK8P45983 427 aa7.79□□□□□ -1.16
VPS13C-210ENST00000561258 HDLBPQ00341 1268 aaKnown RBP7.79□□□□□ -1.16
VPS13C-210ENST00000561258 ZNF792Q3KQV3 632 aa7.79□□□□□ -1.16
VPS13C-210ENST00000561258 KIAA0319Q5VV43 1072 aa7.79□□□□□ -1.16
VPS13C-210ENST00000561258 EHD4Q9H223 541 aa7.79□□□□□ -1.16
VPS13C-210ENST00000561258 PARP2Q9UGN5 583 aa7.79□□□□□ -1.16
VPS13C-210ENST00000561258 LIG1P18858 919 aa7.78□□□□□ -1.16
VPS13C-210ENST00000561258 ITPKAP23677 461 aa7.78□□□□□ -1.16
VPS13C-210ENST00000561258 ZNF648Q5T619 568 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-210ENST00000561258 TMC4Q7Z404 712 aa7.78□□□□□ -1.16
VPS13C-210ENST00000561258 DDX54Q8TDD1 881 aaKnown RBP7.78□□□□□ -1.16
VPS13C-210ENST00000561258 WDR89Q96FK6 387 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-210ENST00000561258 DUSP9Q99956 384 aaKnown RBP7.78□□□□□ -1.16
VPS13C-210ENST00000561258 NISCHQ9Y2I1 1504 aa7.78□□□□□ -1.16
VPS13C-210ENST00000561258 XPCQ01831 940 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-210ENST00000561258 CDK5R2Q13319 367 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 ORC1Q13415 861 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 NAALADL2Q58DX5 795 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 PLD6Q8N2A8 252 aaKnown RBP7.77□□□□□ -1.17
VPS13C-210ENST00000561258 FAM181AQ8N9Y4 354 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 DRC1Q96MC2 740 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 FAM161BQ96MY7 647 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 NPHS2Q9NP85 383 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 RNF19AQ9NV58 838 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 WWC3Q9ULE0 1092 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-210ENST00000561258 CARMIL2Q6F5E8 1435 aa7.77□□□□□ -1.17
VPS13C-210ENST00000561258 TMPRSS2O15393 492 aa7.76□□□□□ -1.17
VPS13C-210ENST00000561258 ERCC5P28715 1186 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-210ENST00000561258 ZNF157P51786 506 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-210ENST00000561258 DAB2P98082 770 aa7.76□□□□□ -1.17
VPS13C-210ENST00000561258 ENOX2Q16206 610 aaKnown RBP7.76□□□□□ -1.17
VPS13C-210ENST00000561258 CYP27C1Q4G0S4 372 aa7.76□□□□□ -1.17
VPS13C-210ENST00000561258 STK11IPQ8N1F8 1099 aa7.76□□□□□ -1.17
VPS13C-210ENST00000561258 SETDB2Q96T68 719 aa7.76□□□□□ -1.17
VPS13C-210ENST00000561258 ZC3H12CQ9C0D7 883 aaKnown RBP7.76□□□□□ -1.17
VPS13C-210ENST00000561258 FAM87AP0C7U9 286 aa7.75□□□□□ -1.17
VPS13C-210ENST00000561258 CD8BP10966 210 aa7.75□□□□□ -1.17
VPS13C-210ENST00000561258 ATP2B2Q01814 1243 aa7.75□□□□□ -1.17
VPS13C-210ENST00000561258 CCDC86Q9H6F5 360 aaKnown RBP7.75□□□□□ -1.17
VPS13C-210ENST00000561258 U3KQE9 123 aa7.75□□□□□ -1.17
VPS13C-210ENST00000561258 ITGAEP38570 1179 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 CD96P40200 585 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 RAD51AP2Q09MP3 1159 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 AP3B2Q13367 1082 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 ZNF124Q15973 351 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 METTL16Q86W50 562 aaKnown RBP7.74□□□□□ -1.17
VPS13C-210ENST00000561258 NIF3L1Q9GZT8 377 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 MRS2Q9HD23 443 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 ABCB6Q9NP58 842 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 CRIM1Q9NZV1 1036 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 SYNGAP1Q96PV0 1343 aa7.74□□□□□ -1.17
VPS13C-210ENST00000561258 PNMA6FA0A0J9YX94 578 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 BIN1O00499 593 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 SORBS3O60504 671 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 FAAP100Q0VG06 881 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 PSMD2Q13200 908 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 C9orf131Q5VYM1 1079 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 NETO1Q8TDF5 533 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 MISP3Q96FF7 219 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 FANCD2OSQ96PS1 177 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 PIDD1Q9HB75 910 aa7.73□□□□□ -1.17
VPS13C-210ENST00000561258 ZNF862O60290 1169 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 CPNE3O75131 537 aaKnown RBP7.72□□□□□ -1.17
VPS13C-210ENST00000561258 NEFLP07196 543 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 RNASE1P07998 156 aaKnown RBP7.72□□□□□ -1.17
VPS13C-210ENST00000561258 FUT4P22083 530 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 FANCCQ00597 558 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 ALG1LQ6GMV1 187 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 TMEM87AQ8NBN3 555 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 RC3H2Q9HBD1 1191 aaKnown RBP7.72□□□□□ -1.17
VPS13C-210ENST00000561258 DISC1Q9NRI5 854 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 METTL5Q9NRN9 209 aaKnown RBP7.72□□□□□ -1.17
VPS13C-210ENST00000561258 VTI1BQ9UEU0 232 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 ADAMTS6Q9UKP5 1117 aa7.72□□□□□ -1.17
VPS13C-210ENST00000561258 LEFTY1O75610 366 aa7.71□□□□□ -1.18
VPS13C-210ENST00000561258 ID3Q02535 119 aa7.71□□□□□ -1.18
VPS13C-210ENST00000561258 PTPN12Q05209 780 aaKnown RBP7.71□□□□□ -1.18
VPS13C-210ENST00000561258 SF3A1Q15459 793 aaKnown RBP7.71□□□□□ -1.18
VPS13C-210ENST00000561258 SMYD4Q8IYR2 804 aaPredicted RBP7.71□□□□□ -1.18
VPS13C-210ENST00000561258 GLIS3Q8NEA6 775 aa7.71□□□□□ -1.18
VPS13C-210ENST00000561258 MBNL3Q9NUK0 354 aaKnown RBP7.71□□□□□ -1.18
VPS13C-210ENST00000561258 TMEM238LA0A1B0GVL6 79 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 RNGTTO60942 597 aaKnown RBP7.7□□□□□ -1.18
VPS13C-210ENST00000561258 GADD45BO75293 160 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-210ENST00000561258 SLFN14P0C7P3 912 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 TTLL4Q14679 1199 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 ATG4DQ86TL0 474 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-210ENST00000561258 NT5DC4Q86YG4 428 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 FBF1Q8TES7 1133 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 FAM168AQ92567 244 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 UBXN4Q92575 508 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 CCDC74AQ96AQ1 378 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 CSRNP1Q96S65 589 aa7.7□□□□□ -1.18
VPS13C-210ENST00000561258 ATXN3LQ9H3M9 355 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms