RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 ZSCAN29Q8IWY8 852 aaPredicted RBP22.3■■□□□ 1.16
TSPAN3-208ENST00000560514 LPIN2Q92539 896 aa22.3■■□□□ 1.16
TSPAN3-208ENST00000560514 SLC45A1Q9Y2W3 748 aa22.3■■□□□ 1.16
TSPAN3-208ENST00000560514 LRRFIP2Q9Y608 721 aaKnown RBP22.3■■□□□ 1.16
TSPAN3-208ENST00000560514 FGFR2P21802 821 aa22.29■■□□□ 1.16
TSPAN3-208ENST00000560514 ANKRD44Q8N8A2 993 aa22.29■■□□□ 1.16
TSPAN3-208ENST00000560514 PAWRQ96IZ0 340 aaKnown RBP22.29■■□□□ 1.16
TSPAN3-208ENST00000560514 GNL3LQ9NVN8 582 aaKnown RBP22.29■■□□□ 1.16
TSPAN3-208ENST00000560514 FAM198AQ9UFP1 575 aa22.29■■□□□ 1.16
TSPAN3-208ENST00000560514 DOCK2Q92608 1830 aa22.29■■□□□ 1.16
TSPAN3-208ENST00000560514 COL6A3P12111 3177 aa22.28■■□□□ 1.16
TSPAN3-208ENST00000560514 PTPRAP18433 802 aa22.28■■□□□ 1.16
TSPAN3-208ENST00000560514 PAK6Q9NQU5 681 aaPredicted RBP22.28■■□□□ 1.16
TSPAN3-208ENST00000560514 PRDX5P30044 214 aa22.27■■□□□ 1.16
TSPAN3-208ENST00000560514 MNX1P50219 401 aaPredicted RBP22.27■■□□□ 1.16
TSPAN3-208ENST00000560514 CRISPLD2Q9H0B8 497 aa22.26■■□□□ 1.15
TSPAN3-208ENST00000560514 PNMA3Q9UL41 463 aa22.26■■□□□ 1.15
TSPAN3-208ENST00000560514 AFG3L2Q9Y4W6 797 aa22.26■■□□□ 1.15
TSPAN3-208ENST00000560514 LAMA3Q16787 3333 aa22.26■■□□□ 1.15
TSPAN3-208ENST00000560514 DOCK3Q8IZD9 2030 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 TRIM75PA6NK02 468 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 PHF20L1A8MW92 1017 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 EYA2O00167 538 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 RGS3P49796 1198 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 GPR153Q6NV75 609 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 ZFPM1Q8IX07 1006 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 C7orf61Q8IZ16 206 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 ANKRD13CQ8N6S4 541 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.25■■□□□ 1.154e-7■■■□□ 14.7
TSPAN3-208ENST00000560514 MRS2Q9HD23 443 aa22.25■■□□□ 1.15
TSPAN3-208ENST00000560514 PTPRFP10586 1907 aa22.24■■□□□ 1.15
TSPAN3-208ENST00000560514 ALPK3Q96L96 1907 aa22.24■■□□□ 1.15
TSPAN3-208ENST00000560514 ENTPD3O75355 529 aa22.24■■□□□ 1.15
TSPAN3-208ENST00000560514 BMP8BP34820 402 aa22.24■■□□□ 1.15
TSPAN3-208ENST00000560514 DEFB123Q8N688 67 aa22.24■■□□□ 1.15
TSPAN3-208ENST00000560514 ANKLE1Q8NAG6 615 aa22.24■■□□□ 1.15
TSPAN3-208ENST00000560514 MYH2Q9UKX2 1941 aa22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 CTNND1O60716 968 aaKnown RBP22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 ZGPATQ8N5A5 531 aaKnown RBP22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 DIS3LQ8TF46 1054 aaKnown RBP22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 IDI2Q9BXS1 227 aa22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 DENND2AQ9ULE3 1009 aa22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 ZMYND8Q9ULU4 1186 aaPredicted RBP22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 AGTPBP1Q9UPW5 1226 aa22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 DOCK1Q14185 1865 aa22.23■■□□□ 1.15
TSPAN3-208ENST00000560514 FAM110CQ1W6H9 321 aa22.22■■□□□ 1.15
TSPAN3-208ENST00000560514 SLF2Q8IX21 1173 aa22.22■■□□□ 1.15
TSPAN3-208ENST00000560514 GDF15Q99988 308 aa22.22■■□□□ 1.15
TSPAN3-208ENST00000560514 HMGCRP04035 888 aa22.21■■□□□ 1.15
TSPAN3-208ENST00000560514 DZIP1Q86YF9 867 aaKnown RBP22.21■■□□□ 1.15
TSPAN3-208ENST00000560514 NBPF3Q9H094 633 aa22.21■■□□□ 1.15
TSPAN3-208ENST00000560514 SALL1Q9NSC2 1324 aa22.21■■□□□ 1.15
TSPAN3-208ENST00000560514 ATRNL1Q5VV63 1379 aa22.21■■□□□ 1.15
TSPAN3-208ENST00000560514 A0A0C4DFX4 3053 aa22.2■■□□□ 1.14
TSPAN3-208ENST00000560514 SEMA3EO15041 775 aa22.2■■□□□ 1.14
TSPAN3-208ENST00000560514 ATP2B3Q16720 1220 aa22.2■■□□□ 1.14
TSPAN3-208ENST00000560514 HMX1Q9NP08 348 aaPredicted RBP22.2■■□□□ 1.14
TSPAN3-208ENST00000560514 CEP126Q9P2H0 1117 aa22.2■■□□□ 1.14
TSPAN3-208ENST00000560514 PABPC4Q13310 644 aaKnown RBP eCLIP22.19■■□□□ 1.14
TSPAN3-208ENST00000560514 PICALMQ13492 652 aa22.19■■□□□ 1.14
TSPAN3-208ENST00000560514 PTPRCP08575 1304 aa22.19■■□□□ 1.14
TSPAN3-208ENST00000560514 PHIPQ8WWQ0 1821 aa22.19■■□□□ 1.14
TSPAN3-208ENST00000560514 RPTORQ8N122 1335 aa22.18■■□□□ 1.14
TSPAN3-208ENST00000560514 GCLCP48506 637 aaPredicted RBP22.18■■□□□ 1.14
TSPAN3-208ENST00000560514 PROCA1Q8NCQ7 364 aaPredicted RBP22.18■■□□□ 1.14
TSPAN3-208ENST00000560514 USP44Q9H0E7 712 aa22.18■■□□□ 1.14
TSPAN3-208ENST00000560514 SIL1Q9H173 461 aa22.18■■□□□ 1.14
TSPAN3-208ENST00000560514 STXBP5LQ9Y2K9 1186 aa22.18■■□□□ 1.14
TSPAN3-208ENST00000560514 CUL9Q8IWT3 2517 aa22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 DDTLA6NHG4 134 aaPredicted RBP22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 SYN1P17600 705 aa22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 MAP3K10Q02779 954 aa22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 TREML2Q5T2D2 321 aa22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 SH3BP5LQ7L8J4 393 aa22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 TDHQ8IZJ6 230 aa22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 C11orf49Q9H6J7 331 aa22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 ABCF2Q9UG63 623 aa22.17■■□□□ 1.14
TSPAN3-208ENST00000560514 GAKO14976 1311 aa22.16■■□□□ 1.14
TSPAN3-208ENST00000560514 RFX5P48382 616 aaPredicted RBP22.16■■□□□ 1.14
TSPAN3-208ENST00000560514 LRIT3Q3SXY7 679 aa22.16■■□□□ 1.14
TSPAN3-208ENST00000560514 Q7L0L9 218 aa22.16■■□□□ 1.14
TSPAN3-208ENST00000560514 UBE2OQ9C0C9 1292 aaKnown RBP22.16■■□□□ 1.14
TSPAN3-208ENST00000560514 FBXO3Q9UK99 471 aa22.16■■□□□ 1.14
TSPAN3-208ENST00000560514 MAGEA10P43363 369 aaPredicted RBP22.15■■□□□ 1.14
TSPAN3-208ENST00000560514 PHKA1P46020 1223 aa22.15■■□□□ 1.14
TSPAN3-208ENST00000560514 SPTY2D1Q68D10 685 aaPredicted RBP22.15■■□□□ 1.14
TSPAN3-208ENST00000560514 ATG9AQ7Z3C6 839 aa22.15■■□□□ 1.14
TSPAN3-208ENST00000560514 CCDC84Q86UT8 332 aaPredicted RBP22.15■■□□□ 1.14
TSPAN3-208ENST00000560514 MRPL50Q8N5N7 158 aaKnown RBP22.15■■□□□ 1.14
TSPAN3-208ENST00000560514 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.15■■□□□ 1.14
TSPAN3-208ENST00000560514 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.15■■□□□ 1.14
TSPAN3-208ENST00000560514 DDX60LQ5H9U9 1706 aaKnown RBP22.14■■□□□ 1.14
TSPAN3-208ENST00000560514 CIAO1O76071 339 aa22.14■■□□□ 1.13
TSPAN3-208ENST00000560514 BTDP43251 543 aa22.14■■□□□ 1.13
TSPAN3-208ENST00000560514 SPP2Q13103 211 aa22.14■■□□□ 1.13
TSPAN3-208ENST00000560514 TBC1D2Q9BYX2 928 aa22.14■■□□□ 1.13
TSPAN3-208ENST00000560514 TBC1D12O60347 775 aa22.13■■□□□ 1.13
TSPAN3-208ENST00000560514 SLURP2P0DP57 97 aa22.13■■□□□ 1.13
TSPAN3-208ENST00000560514 ZNF280CQ8ND82 737 aa22.13■■□□□ 1.13
TSPAN3-208ENST00000560514 OSBPL5Q9H0X9 879 aaPredicted RBP22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms