RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 FAM168AQ92567 244 aa5.48□□□□□ -1.53
VPS13C-205ENST00000558088 ACSBG1Q96GR2 724 aa5.48□□□□□ -1.53
VPS13C-205ENST00000558088 C1orf115Q9H7X2 142 aa5.48□□□□□ -1.53
VPS13C-205ENST00000558088 FARP2O94887 1054 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-205ENST00000558088 CEACAM5P06731 702 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 CD8BP10966 210 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 ECM1Q16610 540 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 AOC3Q16853 763 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 ZNF648Q5T619 568 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-205ENST00000558088 SULF2Q8IWU5 870 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 EPS8L3Q8TE67 593 aaKnown RBP5.47□□□□□ -1.53
VPS13C-205ENST00000558088 ALKBH8Q96BT7 664 aaKnown RBP5.47□□□□□ -1.53
VPS13C-205ENST00000558088 SLC38A3Q99624 504 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 DUSP23Q9BVJ7 150 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 EMILIN2Q9BXX0 1053 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 PICK1Q9NRD5 415 aa5.47□□□□□ -1.53
VPS13C-205ENST00000558088 ITIH2P19823 946 aa5.46□□□□□ -1.54
VPS13C-205ENST00000558088 KSR1Q8IVT5 923 aa5.46□□□□□ -1.54
VPS13C-205ENST00000558088 TOP6BLQ8N6T0 577 aa5.46□□□□□ -1.54
VPS13C-205ENST00000558088 GTF2IRD1Q9UHL9 959 aa5.46□□□□□ -1.54
VPS13C-205ENST00000558088 AKAP2Q9Y2D5 859 aa5.46□□□□□ -1.54
VPS13C-205ENST00000558088 SAMM50Q9Y512 469 aa5.46□□□□□ -1.54
VPS13C-205ENST00000558088 PCDHGC5Q9Y5F6 944 aa5.46□□□□□ -1.54
VPS13C-205ENST00000558088 LEFTY1O75610 366 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 RNASE1P07998 156 aaKnown RBP5.45□□□□□ -1.54
VPS13C-205ENST00000558088 ARNTP27540 789 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 ERVK-24P63145 666 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 MAP1SQ66K74 1059 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-205ENST00000558088 C14orf37Q86TY3 774 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 RNF214Q8ND24 703 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 GLIS3Q8NEA6 775 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 TMEM40Q8WWA1 233 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 ISL2Q96A47 359 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 RBCK1Q9BYM8 510 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 CBX8Q9HC52 389 aa5.45□□□□□ -1.54
VPS13C-205ENST00000558088 MBNL3Q9NUK0 354 aaKnown RBP5.45□□□□□ -1.54
VPS13C-205ENST00000558088 OXCT1P55809 520 aa5.44□□□□□ -1.54
VPS13C-205ENST00000558088 ZC3H12AQ5D1E8 599 aaKnown RBP5.44□□□□□ -1.54
VPS13C-205ENST00000558088 SLC23A3Q6PIS1 610 aa5.44□□□□□ -1.54
VPS13C-205ENST00000558088 PDZD3Q86UT5 571 aa5.44□□□□□ -1.54
VPS13C-205ENST00000558088 WFDC3Q8IUB2 231 aa5.44□□□□□ -1.54
VPS13C-205ENST00000558088 ASB11Q8WXH4 323 aa5.44□□□□□ -1.54
VPS13C-205ENST00000558088 BCO2Q9BYV7 579 aa5.44□□□□□ -1.54
VPS13C-205ENST00000558088 SNX11Q9Y5W9 270 aa5.44□□□□□ -1.54
VPS13C-205ENST00000558088 CARMIL2Q6F5E8 1435 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 GNAT3A8MTJ3 354 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 IGHA2P01877 340 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 NEFMP07197 916 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 NME2P22392 152 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 CD96P40200 585 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 IKZF1Q13422 519 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 LCE1DQ5T752 114 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 CDC37L1Q7L3B6 337 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 TXNDC2Q86VQ3 553 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 LRRN4CLQ8ND94 238 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 BIN2Q9UBW5 565 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-205ENST00000558088 ADAMTS6Q9UKP5 1117 aa5.43□□□□□ -1.54
VPS13C-205ENST00000558088 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-205ENST00000558088 DBX1A6NMT0 343 aa5.42□□□□□ -1.54
VPS13C-205ENST00000558088 ZNF124Q15973 351 aa5.42□□□□□ -1.54
VPS13C-205ENST00000558088 GPBAR1Q8TDU6 330 aa5.42□□□□□ -1.54
VPS13C-205ENST00000558088 CEP44Q9C0F1 390 aa5.42□□□□□ -1.54
VPS13C-205ENST00000558088 PRDM10Q9NQV6 1147 aa5.42□□□□□ -1.54
VPS13C-205ENST00000558088 FAM53CQ9NYF3 392 aa5.42□□□□□ -1.54
VPS13C-205ENST00000558088 IGF2BP3O00425 579 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS13C-205ENST00000558088 GSTT1P30711 240 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 KCNMB1Q16558 191 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS13C-205ENST00000558088 NXPE4Q6UWF7 544 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 PI16Q6UXB8 463 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 KCT2Q8NC54 265 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 FLAD1Q8NFF5 587 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 TNKS2Q9H2K2 1166 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 DCTN4Q9UJW0 460 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 PLAGL2Q9UPG8 496 aa5.41□□□□□ -1.54
VPS13C-205ENST00000558088 PNMA6FA0A0J9YX94 578 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 LRRC10BA6NIK2 292 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 SOWAHDA6NJG2 315 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 PLCB3Q01970 1234 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 ZP2Q05996 745 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 LRRC14Q15048 493 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 PPM1JQ5JR12 505 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 TMC7Q7Z402 723 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 ZSWIM9Q86XI8 627 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 STK35Q8TDR2 534 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 FAM84AQ96KN4 292 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 SRCIN1Q9C0H9 1055 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 PPM1HQ9ULR3 514 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 U3KQE9 123 aa5.4□□□□□ -1.54
VPS13C-205ENST00000558088 FANCGO15287 622 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 TRIM37O94972 964 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 CLCN7P51798 805 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 ZNF252P-AS1Q0IIN9 211 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 LLGL2Q6P1M3 1020 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 TPTE2Q6XPS3 522 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 ELMO3Q96BJ8 720 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 FOXQ1Q9C009 403 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 PRDM5Q9NQX1 630 aaPredicted RBP5.39□□□□□ -1.55
VPS13C-205ENST00000558088 CSADQ9Y600 493 aa5.39□□□□□ -1.55
VPS13C-205ENST00000558088 DCDC2CA8MYV0 355 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms