RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 MYO5AQ9Y4I1 1855 aaKnown RBP20.46■□□□□ 0.87
NEDD4-212ENST00000557845 HMMRO75330 724 aa20.46■□□□□ 0.87
NEDD4-212ENST00000557845 INPP5BP32019 993 aa20.46■□□□□ 0.87
NEDD4-212ENST00000557845 ZAP70P43403 619 aa20.46■□□□□ 0.87
NEDD4-212ENST00000557845 GTF2A2P52657 109 aa20.46■□□□□ 0.87
NEDD4-212ENST00000557845 DDX4Q9NQI0 724 aaKnown RBP20.46■□□□□ 0.87
NEDD4-212ENST00000557845 RFX7Q2KHR2 1363 aa20.46■□□□□ 0.87
NEDD4-212ENST00000557845 MAP4K4O95819 1239 aaPredicted RBP20.45■□□□□ 0.86
NEDD4-212ENST00000557845 PICALMQ13492 652 aa20.45■□□□□ 0.86
NEDD4-212ENST00000557845 SH3BP5LQ7L8J4 393 aa20.45■□□□□ 0.86
NEDD4-212ENST00000557845 AACSQ86V21 672 aa20.45■□□□□ 0.86
NEDD4-212ENST00000557845 ZSCAN29Q8IWY8 852 aaPredicted RBP20.45■□□□□ 0.86
NEDD4-212ENST00000557845 IL1RAPL2Q9NP60 686 aa20.45■□□□□ 0.86
NEDD4-212ENST00000557845 DDTLA6NHG4 134 aaPredicted RBP20.44■□□□□ 0.86
NEDD4-212ENST00000557845 IGSF3O75054 1194 aa20.44■□□□□ 0.86
NEDD4-212ENST00000557845 NPM3O75607 178 aaKnown RBP20.44■□□□□ 0.86
NEDD4-212ENST00000557845 NAA16Q6N069 864 aaPredicted RBP20.44■□□□□ 0.86
NEDD4-212ENST00000557845 CTU1Q7Z7A3 348 aaKnown RBP20.44■□□□□ 0.86
NEDD4-212ENST00000557845 DOCK2Q92608 1830 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 CCL15-CCL14A0A0B4J2E2 113 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 IRF6O14896 467 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 FKTNO75072 461 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 MAP3K10Q02779 954 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 PPATQ06203 517 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 CCL15Q16663 113 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 BRI3BPQ8WY22 251 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 KIF1BPQ96EK5 621 aa20.43■□□□□ 0.86
NEDD4-212ENST00000557845 CCDC85CA6NKD9 419 aa20.42■□□□□ 0.86
NEDD4-212ENST00000557845 PHF20L1A8MW92 1017 aa20.42■□□□□ 0.86
NEDD4-212ENST00000557845 APBB1O00213 710 aa20.42■□□□□ 0.86
NEDD4-212ENST00000557845 RAB11FIP3O75154 756 aa20.42■□□□□ 0.86
NEDD4-212ENST00000557845 PPIL2Q13356 520 aa20.42■□□□□ 0.86
NEDD4-212ENST00000557845 CLASRPQ8N2M8 674 aaKnown RBP20.42■□□□□ 0.86
NEDD4-212ENST00000557845 NOL10Q9BSC4 688 aaKnown RBP20.42■□□□□ 0.86
NEDD4-212ENST00000557845 PIH1D3Q9NQM4 214 aaKnown RBP20.42■□□□□ 0.86
NEDD4-212ENST00000557845 ATRNL1Q5VV63 1379 aa20.42■□□□□ 0.86
NEDD4-212ENST00000557845 BAG3O95817 575 aa20.41■□□□□ 0.86
NEDD4-212ENST00000557845 CETPP11597 493 aa20.41■□□□□ 0.86
NEDD4-212ENST00000557845 PPP4CP60510 307 aa20.41■□□□□ 0.86
NEDD4-212ENST00000557845 CRHR2Q13324 411 aa20.41■□□□□ 0.86
NEDD4-212ENST00000557845 NOL9Q5SY16 702 aaKnown RBP20.41■□□□□ 0.86
NEDD4-212ENST00000557845 SH3RF3Q8TEJ3 882 aaPredicted RBP20.41■□□□□ 0.86
NEDD4-212ENST00000557845 AATFQ9NY61 560 aaKnown RBP eCLIP20.41■□□□□ 0.86
NEDD4-212ENST00000557845 SNAPC2Q13487 334 aa20.4■□□□□ 0.86
NEDD4-212ENST00000557845 ADGRA1Q86SQ6 560 aa20.4■□□□□ 0.86
NEDD4-212ENST00000557845 TEX11Q8IYF3 940 aa20.4■□□□□ 0.86
NEDD4-212ENST00000557845 NDUFB9Q9Y6M9 179 aa20.4■□□□□ 0.86
NEDD4-212ENST00000557845 MAST2Q6P0Q8 1798 aa20.39■□□□□ 0.86
NEDD4-212ENST00000557845 SLURP2P0DP57 97 aa20.39■□□□□ 0.85
NEDD4-212ENST00000557845 PLCG2P16885 1265 aa20.39■□□□□ 0.85
NEDD4-212ENST00000557845 PKN2Q16513 984 aaKnown RBP20.39■□□□□ 0.85
NEDD4-212ENST00000557845 FAM43AQ8N2R8 423 aa20.39■□□□□ 0.85
NEDD4-212ENST00000557845 OSBPL5Q9H0X9 879 aaPredicted RBP20.39■□□□□ 0.85
NEDD4-212ENST00000557845 ANTXR1Q9H6X2 564 aa20.39■□□□□ 0.85
NEDD4-212ENST00000557845 TBC1D12O60347 775 aa20.38■□□□□ 0.85
NEDD4-212ENST00000557845 IDH1O75874 414 aaKnown RBP20.38■□□□□ 0.85
NEDD4-212ENST00000557845 IFIT2P09913 472 aaKnown RBP20.38■□□□□ 0.85
NEDD4-212ENST00000557845 BTBD19C9JJ37 291 aa20.37■□□□□ 0.85
NEDD4-212ENST00000557845 CYP7A1P22680 504 aa20.37■□□□□ 0.85
NEDD4-212ENST00000557845 TAF1CQ15572 869 aaPredicted RBP20.37■□□□□ 0.85
NEDD4-212ENST00000557845 SCYL3Q8IZE3 742 aa20.37■□□□□ 0.85
NEDD4-212ENST00000557845 BCL11AQ9H165 835 aa20.37■□□□□ 0.85
NEDD4-212ENST00000557845 ZFYVE28Q9HCC9 887 aa20.37■□□□□ 0.85
NEDD4-212ENST00000557845 KCNH4Q9UQ05 1017 aa20.37■□□□□ 0.85
NEDD4-212ENST00000557845 CTNND1O60716 968 aaKnown RBP20.36■□□□□ 0.85
NEDD4-212ENST00000557845 MAP3K12Q12852 859 aa20.36■□□□□ 0.85
NEDD4-212ENST00000557845 TGFBRAP1Q8WUH2 860 aa20.36■□□□□ 0.85
NEDD4-212ENST00000557845 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.36■□□□□ 0.85
NEDD4-212ENST00000557845 ZCCHC17Q9NP64 241 aaKnown RBP20.36■□□□□ 0.85
NEDD4-212ENST00000557845 CDK5RAP2Q96SN8 1893 aa20.36■□□□□ 0.85
NEDD4-212ENST00000557845 COL2A1P02458 1487 aaPredicted RBP20.36■□□□□ 0.85
NEDD4-212ENST00000557845 PTPRAP18433 802 aa20.35■□□□□ 0.85
NEDD4-212ENST00000557845 SP3Q02447 781 aa20.35■□□□□ 0.85
NEDD4-212ENST00000557845 MAGEB6Q8N7X4 407 aa20.35■□□□□ 0.85
NEDD4-212ENST00000557845 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.35■□□□□ 0.85
NEDD4-212ENST00000557845 PICK1Q9NRD5 415 aa20.35■□□□□ 0.85
NEDD4-212ENST00000557845 ZHX2Q9Y6X8 837 aa20.35■□□□□ 0.85
NEDD4-212ENST00000557845 CXCL11O14625 94 aa20.34■□□□□ 0.85
NEDD4-212ENST00000557845 DYNLL1P63167 89 aaKnown RBP20.34■□□□□ 0.85
NEDD4-212ENST00000557845 TTF1Q15361 905 aaPredicted RBP20.34■□□□□ 0.85
NEDD4-212ENST00000557845 TMED8Q6PL24 325 aaPredicted RBP20.34■□□□□ 0.85
NEDD4-212ENST00000557845 ERO1AQ96HE7 468 aa20.34■□□□□ 0.85
NEDD4-212ENST00000557845 YTHDC1Q96MU7 727 aaKnown RBP20.34■□□□□ 0.85
NEDD4-212ENST00000557845 DHX36Q9H2U1 1008 aaKnown RBP20.34■□□□□ 0.85
NEDD4-212ENST00000557845 PI4KBQ9UBF8 816 aa20.34■□□□□ 0.85
NEDD4-212ENST00000557845 FOCADQ5VW36 1801 aa20.34■□□□□ 0.85
NEDD4-212ENST00000557845 FAM196BA6NMK8 535 aa20.33■□□□□ 0.85
NEDD4-212ENST00000557845 FBXO46Q6PJ61 603 aaPredicted RBP20.33■□□□□ 0.85
NEDD4-212ENST00000557845 ANKRD23Q86SG2 305 aa20.33■□□□□ 0.85
NEDD4-212ENST00000557845 MAPKAPK5Q8IW41 473 aa20.33■□□□□ 0.85
NEDD4-212ENST00000557845 HPS5Q9UPZ3 1129 aa20.33■□□□□ 0.85
NEDD4-212ENST00000557845 AFG3L2Q9Y4W6 797 aa20.33■□□□□ 0.85
NEDD4-212ENST00000557845 DOCK1Q14185 1865 aa20.33■□□□□ 0.84
NEDD4-212ENST00000557845 TLR2O60603 784 aa20.32■□□□□ 0.84
NEDD4-212ENST00000557845 MOGSQ13724 837 aa20.32■□□□□ 0.84
NEDD4-212ENST00000557845 MIGA1Q8NAN2 632 aa20.32■□□□□ 0.84
NEDD4-212ENST00000557845 CD99L2Q8TCZ2 262 aa20.32■□□□□ 0.84
NEDD4-212ENST00000557845 LRRCC1Q9C099 1032 aa20.32■□□□□ 0.84
NEDD4-212ENST00000557845 HERC5Q9UII4 1024 aaKnown RBP20.32■□□□□ 0.84
NEDD4-212ENST00000557845 TRIM17Q9Y577 477 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms