RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 DYNLL1P63167 89 aaKnown RBP16.44■□□□□ 0.22
SHMT2-228ENST00000557302 ZSCAN25Q6NSZ9 544 aa16.44■□□□□ 0.22
SHMT2-228ENST00000557302 KBTBD3Q8NAB2 608 aa16.44■□□□□ 0.22
SHMT2-228ENST00000557302 CAPNS2Q96L46 248 aa16.44■□□□□ 0.22
SHMT2-228ENST00000557302 TCRBV5S4A2TA0A5A2 114 aa16.43■□□□□ 0.22
SHMT2-228ENST00000557302 ADD2P35612 726 aa16.43■□□□□ 0.22
SHMT2-228ENST00000557302 GRM1Q13255 1194 aa16.43■□□□□ 0.22
SHMT2-228ENST00000557302 MAP3K11Q16584 847 aa16.43■□□□□ 0.22
SHMT2-228ENST00000557302 CYP4F22Q6NT55 531 aa16.43■□□□□ 0.22
SHMT2-228ENST00000557302 RGMBQ6NW40 437 aa16.43■□□□□ 0.22
SHMT2-228ENST00000557302 ZSCAN29Q8IWY8 852 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-228ENST00000557302 ZFPM1Q8IX07 1006 aa16.43■□□□□ 0.22
SHMT2-228ENST00000557302 FZD1Q9UP38 647 aa16.43■□□□□ 0.22
SHMT2-228ENST00000557302 MAGEB6P1A0A0J9YX57 407 aa16.42■□□□□ 0.22
SHMT2-228ENST00000557302 USP2O75604 605 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-228ENST00000557302 ZNF157P51786 506 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-228ENST00000557302 UBE3CQ15386 1083 aa16.42■□□□□ 0.22
SHMT2-228ENST00000557302 LRRFIP1Q32MZ4 808 aaKnown RBP16.42■□□□□ 0.22
SHMT2-228ENST00000557302 DCAF15Q66K64 600 aa16.42■□□□□ 0.22
SHMT2-228ENST00000557302 TGFBRAP1Q8WUH2 860 aa16.42■□□□□ 0.22
SHMT2-228ENST00000557302 CSRNP1Q96S65 589 aa16.42■□□□□ 0.22
SHMT2-228ENST00000557302 RIOK1Q9BRS2 568 aaKnown RBP16.42■□□□□ 0.22
SHMT2-228ENST00000557302 WDR33Q9C0J8 1336 aaKnown RBP16.42■□□□□ 0.22
SHMT2-228ENST00000557302 LDLRAD1Q5T700 205 aa16.41■□□□□ 0.22
SHMT2-228ENST00000557302 MAPKAPK5Q8IW41 473 aa16.41■□□□□ 0.22
SHMT2-228ENST00000557302 PLEKHM2Q8IWE5 1019 aa16.41■□□□□ 0.22
SHMT2-228ENST00000557302 CCDC102AQ96A19 550 aa16.41■□□□□ 0.22
SHMT2-228ENST00000557302 OSBPL5Q9H0X9 879 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-228ENST00000557302 ATRNL1Q5VV63 1379 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 DDTLA6NHG4 134 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-228ENST00000557302 UNCXA6NJT0 531 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 ZFYP08048 801 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-228ENST00000557302 USP5P45974 858 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 SLFNL1Q499Z3 407 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 MIGA2Q7L4E1 593 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 SH3BP5LQ7L8J4 393 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 FSD1Q9BTV5 496 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 ZNF341Q9BYN7 854 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 CRNKL1Q9BZJ0 848 aaKnown RBP16.4■□□□□ 0.22
SHMT2-228ENST00000557302 OSBPL3Q9H4L5 887 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 COL2A1P02458 1487 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-228ENST00000557302 FLT1P17948 1338 aa16.4■□□□□ 0.22
SHMT2-228ENST00000557302 RNF113AO15541 343 aaKnown RBP16.39■□□□□ 0.21
SHMT2-228ENST00000557302 MBD4O95243 580 aa16.39■□□□□ 0.21
SHMT2-228ENST00000557302 CHGBP05060 677 aa16.39■□□□□ 0.21
SHMT2-228ENST00000557302 ANKRD13AQ8IZ07 590 aa16.39■□□□□ 0.21
SHMT2-228ENST00000557302 EVI5LQ96CN4 794 aa16.39■□□□□ 0.21
SHMT2-228ENST00000557302 DHX36Q9H2U1 1008 aaKnown RBP16.39■□□□□ 0.21
SHMT2-228ENST00000557302 FAM155AB1AL88 458 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-228ENST00000557302 SLC10A3P09131 477 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 MAP3K9P80192 1104 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 NOGQ13253 232 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 CENPQQ7L2Z9 268 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-228ENST00000557302 RASAL3Q86YV0 1011 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 LCORLQ8N3X6 602 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.38■□□□□ 0.218e-7■■□□□ 11.7
SHMT2-228ENST00000557302 APPBP2Q92624 585 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 AIDAQ96BJ3 306 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 SLC10A4Q96EP9 437 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 WRNIP1Q96S55 665 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 ARMT1Q9H993 441 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 CSADQ9Y600 493 aa16.38■□□□□ 0.21
SHMT2-228ENST00000557302 TRIM6-TRIM34B2RNG4 842 aa16.37■□□□□ 0.21
SHMT2-228ENST00000557302 AOC2O75106 756 aa16.37■□□□□ 0.21
SHMT2-228ENST00000557302 PDE4AP27815 886 aa16.37■□□□□ 0.21
SHMT2-228ENST00000557302 MAP2K2P36507 400 aa16.37■□□□□ 0.21
SHMT2-228ENST00000557302 CCDC136Q96JN2 1154 aa16.37■□□□□ 0.21
SHMT2-228ENST00000557302 CLMNQ96JQ2 1002 aa16.37■□□□□ 0.21
SHMT2-228ENST00000557302 PUS7LQ9H0K6 701 aaKnown RBP16.37■□□□□ 0.21
SHMT2-228ENST00000557302 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-228ENST00000557302 AK9Q5TCS8 1911 aa16.37■□□□□ 0.21
SHMT2-228ENST00000557302 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-228ENST00000557302 PI4KBQ9UBF8 816 aa16.36■□□□□ 0.21
SHMT2-228ENST00000557302 SAP30BPQ9UHR5 308 aaKnown RBP16.36■□□□□ 0.21
SHMT2-228ENST00000557302 MYH7P12883 1935 aa16.36■□□□□ 0.21
SHMT2-228ENST00000557302 TBC1D12O60347 775 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 HLA-DOAP06340 250 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 MAP3K10Q02779 954 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 VGLL4Q14135 290 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 OSBP2Q969R2 916 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 RILPL2Q969X0 211 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 ELP3Q9H9T3 547 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 ZNF112Q9UJU3 913 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 PALD1Q9ULE6 856 aa16.35■□□□□ 0.21
SHMT2-228ENST00000557302 MKRN3Q13064 507 aaKnown RBP16.34■□□□□ 0.21
SHMT2-228ENST00000557302 TICAM2Q86XR7 235 aa16.34■□□□□ 0.21
SHMT2-228ENST00000557302 SDR42E1Q8WUS8 393 aa16.34■□□□□ 0.21
SHMT2-228ENST00000557302 ZKSCAN4Q969J2 545 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-228ENST00000557302 WNK4Q96J92 1243 aa16.34■□□□□ 0.21
SHMT2-228ENST00000557302 ZIC5Q96T25 663 aa16.34■□□□□ 0.21
SHMT2-228ENST00000557302 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.34■□□□□ 0.21
SHMT2-228ENST00000557302 DCP1AQ9NPI6 582 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-228ENST00000557302 HERC5Q9UII4 1024 aaKnown RBP16.34■□□□□ 0.21
SHMT2-228ENST00000557302 PHF20L1A8MW92 1017 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 PRKAB2O43741 272 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 SLURP2P0DP57 97 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 INPP5BP32019 993 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 KIF23Q02241 960 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-228ENST00000557302 MAP2K1Q02750 393 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-228ENST00000557302 SLC4A8Q2Y0W8 1093 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms