RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ITGBL1O95965 494 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-227ENST00000557269 EVX2Q03828 476 aa15.4■□□□□ 0.06
SHMT2-227ENST00000557269 SULF1Q8IWU6 871 aa15.4■□□□□ 0.06
SHMT2-227ENST00000557269 TEPSINQ96N21 525 aa15.4■□□□□ 0.06
SHMT2-227ENST00000557269 CRNKL1Q9BZJ0 848 aaKnown RBP15.4■□□□□ 0.06
SHMT2-227ENST00000557269 EPB41L4AQ9HCS5 686 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-227ENST00000557269 SAP30BPQ9UHR5 308 aaKnown RBP15.4■□□□□ 0.06
SHMT2-227ENST00000557269 FLT1P17948 1338 aa15.4■□□□□ 0.06
SHMT2-227ENST00000557269 SGSM2O43147 1006 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 ENTPD3O75355 529 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 TOMM70O94826 608 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 SLURP2P0DP57 97 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 USP5P45974 858 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 CDC37L1Q7L3B6 337 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 FAM83AQ86UY5 434 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 CERS3Q8IU89 383 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 FAM151AQ8WW52 585 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 OSBPL5Q9H0X9 879 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-227ENST00000557269 DCP1AQ9NPI6 582 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-227ENST00000557269 CCDC171Q6TFL3 1326 aa15.39■□□□□ 0.05
SHMT2-227ENST00000557269 FOCADQ5VW36 1801 aa15.38■□□□□ 0.05
SHMT2-227ENST00000557269 DDTLA6NHG4 134 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-227ENST00000557269 SMIM22K7EJ46 135 aa15.38■□□□□ 0.05
SHMT2-227ENST00000557269 NPM3O75607 178 aaKnown RBP15.38■□□□□ 0.05
SHMT2-227ENST00000557269 SLC4A8Q2Y0W8 1093 aa15.38■□□□□ 0.05
SHMT2-227ENST00000557269 NBPF12Q5TAG4 269 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-227ENST00000557269 RBM46Q8TBY0 533 aaKnown RBP15.38■□□□□ 0.05
SHMT2-227ENST00000557269 CDCA5Q96FF9 252 aa15.38■□□□□ 0.05
SHMT2-227ENST00000557269 ESYT1Q9BSJ8 1104 aa15.38■□□□□ 0.05
SHMT2-227ENST00000557269 PALD1Q9ULE6 856 aa15.38■□□□□ 0.05
SHMT2-227ENST00000557269 CYP2D7A0A087X1C5 515 aa15.37■□□□□ 0.05
SHMT2-227ENST00000557269 PATL2C9JE40 543 aaKnown RBP15.37■□□□□ 0.05
SHMT2-227ENST00000557269 CYP2D6P10635 497 aa15.37■□□□□ 0.05
SHMT2-227ENST00000557269 HSPD1P10809 573 aaKnown RBP15.37■□□□□ 0.05
SHMT2-227ENST00000557269 TNNI2P48788 182 aa15.37■□□□□ 0.05
SHMT2-227ENST00000557269 TNFAIP1Q13829 316 aa15.37■□□□□ 0.05
SHMT2-227ENST00000557269 IFNL3Q8IZI9 196 aa15.37■□□□□ 0.05
SHMT2-227ENST00000557269 SMC1BQ8NDV3 1235 aa15.37■□□□□ 0.05
SHMT2-227ENST00000557269 APPP05067 770 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 GNAT2P19087 354 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 PTH1RQ03431 593 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 RUFY2Q8WXA3 655 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 ATP8A2Q9NTI2 1148 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 MCM9Q9NXL9 1143 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 FZD1Q9UP38 647 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 PPP2R3BQ9Y5P8 575 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 DDX60LQ5H9U9 1706 aaKnown RBP15.36■□□□□ 0.05
SHMT2-227ENST00000557269 RAD50Q92878 1312 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 SSC5DA1L4H1 1573 aa15.36■□□□□ 0.05
SHMT2-227ENST00000557269 USP17L12C9JPN9 530 aa15.35■□□□□ 0.05
SHMT2-227ENST00000557269 USP17L21D6R901 530 aa15.35■□□□□ 0.05
SHMT2-227ENST00000557269 PLCD1P51178 756 aa15.35■□□□□ 0.05
SHMT2-227ENST00000557269 CTR9Q6PD62 1173 aa15.35■□□□□ 0.05
SHMT2-227ENST00000557269 ZSCAN29Q8IWY8 852 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-227ENST00000557269 PASKQ96RG2 1323 aa15.35■□□□□ 0.05
SHMT2-227ENST00000557269 ATRNL1Q5VV63 1379 aa15.35■□□□□ 0.05
SHMT2-227ENST00000557269 NAV1Q8NEY1 1877 aa15.34■□□□□ 0.05
SHMT2-227ENST00000557269 FGAP02671 866 aa15.34■□□□□ 0.05
SHMT2-227ENST00000557269 GIMAP6Q6P9H5 292 aa15.34■□□□□ 0.05
SHMT2-227ENST00000557269 MIGA2Q7L4E1 593 aa15.34■□□□□ 0.05
SHMT2-227ENST00000557269 BAZ2AQ9UIF9 1905 aaKnown RBP15.34■□□□□ 0.05
SHMT2-227ENST00000557269 RPAP1Q9BWH6 1393 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-227ENST00000557269 SIPA1L1O43166 1804 aa15.33■□□□□ 0.05
SHMT2-227ENST00000557269 COL2A1P02458 1487 aaPredicted RBP15.33■□□□□ 0.05
SHMT2-227ENST00000557269 FAM196BA6NMK8 535 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 POLR3DP05423 398 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-227ENST00000557269 TDO2P48775 406 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 MFAP1P55081 439 aaKnown RBP15.33■□□□□ 0.04
SHMT2-227ENST00000557269 ALX1Q15699 326 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 CST9Q5W186 159 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 CASC1Q6TDU7 716 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 MOB2Q70IA6 237 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 CSRNP1Q96S65 589 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 LSG1Q9H089 658 aaKnown RBP15.33■□□□□ 0.04
SHMT2-227ENST00000557269 ZNF408Q9H9D4 720 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 MYH1P12882 1939 aa15.33■□□□□ 0.04
SHMT2-227ENST00000557269 FSTL1Q12841 308 aa15.32■□□□□ 0.04
SHMT2-227ENST00000557269 PRKG1Q13976 671 aa15.32■□□□□ 0.04
SHMT2-227ENST00000557269 C8orf34Q49A92 452 aa15.32■□□□□ 0.04
SHMT2-227ENST00000557269 C12orf60Q5U649 245 aa15.32■□□□□ 0.04
SHMT2-227ENST00000557269 DYNLL2Q96FJ2 89 aa15.32■□□□□ 0.04
SHMT2-227ENST00000557269 DSCC1Q9BVC3 393 aa15.32■□□□□ 0.04
SHMT2-227ENST00000557269 NACAP1Q9BZK3 213 aa15.32■□□□□ 0.04
SHMT2-227ENST00000557269 DHX36Q9H2U1 1008 aaKnown RBP15.32■□□□□ 0.04
SHMT2-227ENST00000557269 DNAJC18Q9H819 358 aa15.32■□□□□ 0.04
SHMT2-227ENST00000557269 MINDY4BA8MYZ0 360 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 CELF2O95319 508 aaKnown RBP15.31■□□□□ 0.04
SHMT2-227ENST00000557269 SEC24BO95487 1268 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 MAP3K10Q02779 954 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 SUPT20HL1Q3ZLR7 823 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 SBK1Q52WX2 424 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 METTL16Q86W50 562 aaKnown RBP15.31■□□□□ 0.04
SHMT2-227ENST00000557269 MAP4K1Q92918 833 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 DDRGK1Q96HY6 314 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 NAPBQ9H115 298 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 ANO2Q9NQ90 1003 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 PI4KBQ9UBF8 816 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 TACC3Q9Y6A5 838 aa15.31■□□□□ 0.04
SHMT2-227ENST00000557269 USP2O75604 605 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-227ENST00000557269 GABPAQ06546 454 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms