RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 TCRBV5S4A2TA0A5A2 114 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 RASSF10A6NK89 507 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 RNF113AO15541 343 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 IREB2P48200 963 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 UBE3CQ15386 1083 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 DCAF15Q66K64 600 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 CYP4F22Q6NT55 531 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 MIGA2Q7L4E1 593 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 RILPL2Q969X0 211 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 EVI5LQ96CN4 794 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 KLRG1Q96E93 195 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 CSRNP1Q96S65 589 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 ARMT1Q9H993 441 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 SSC5DA1L4H1 1573 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 MYH7P12883 1935 aa13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 RPAP1Q9BWH6 1393 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-212ENST00000556767 USP2O75604 605 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 MBD4O95243 580 aa13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 ZFYP08048 801 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 PDE4AP27815 886 aa13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 ECE1P42892 770 aa13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 ZNF157P51786 506 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 RGMBQ6NW40 437 aa13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 LCORLQ8N3X6 602 aa13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 AIDAQ96BJ3 306 aa13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 CAPNS2Q96L46 248 aa13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 RIOK1Q9BRS2 568 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 CRNKL1Q9BZJ0 848 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 OSBPL5Q9H0X9 879 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 RFX7Q2KHR2 1363 aa13.81□□□□□ -0.2
CCDC88C-212ENST00000556767 DDTLA6NHG4 134 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 NPM3O75607 178 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 VEGFBP49765 207 aa13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 SLC4A8Q2Y0W8 1093 aa13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 SH3BP5LQ7L8J4 393 aa13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 DNAJC5GQ8N7S2 189 aa13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 ZNF341Q9BYN7 854 aa13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 OSBPL3Q9H4L5 887 aa13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 SAP30BPQ9UHR5 308 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 FLT1P17948 1338 aa13.8□□□□□ -0.2
CCDC88C-212ENST00000556767 APPBP2Q92624 585 aa13.79□□□□□ -0.2
CCDC88C-212ENST00000556767 HHIPL1Q96JK4 782 aa13.79□□□□□ -0.2
CCDC88C-212ENST00000556767 PUS7LQ9H0K6 701 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-212ENST00000556767 WDR33Q9C0J8 1336 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-212ENST00000556767 HLA-DOAP06340 250 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 MAP3K9P80192 1104 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 MAP3K11Q16584 847 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 ANKRD13AQ8IZ07 590 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 SDR42E1Q8WUS8 393 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 CCDC102AQ96A19 550 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 SLC10A4Q96EP9 437 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 DDRGK1Q96HY6 314 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 CLMNQ96JQ2 1002 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 WRNIP1Q96S55 665 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 TRIM34Q9BYJ4 488 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 DHX36Q9H2U1 1008 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 PPP4R2Q9NY27 417 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 PALD1Q9ULE6 856 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 CSADQ9Y600 493 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 SLC4A4Q9Y6R1 1079 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 CDK5RAP2Q96SN8 1893 aa13.78□□□□□ -0.2
CCDC88C-212ENST00000556767 M0R2C6 588 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 PRKAB2O43741 272 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 POLR3DP05423 398 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 MKRN3Q13064 507 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 LDLRAD1Q5T700 205 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 TTC22Q5TAA0 569 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 ATRNL1Q5VV63 1379 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 ERICH6BQ5W0A0 696 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 CRACR2BQ8N4Y2 399 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 OSBP2Q969R2 916 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 ELP3Q9H9T3 547 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 MCM9Q9NXL9 1143 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 PI4KBQ9UBF8 816 aa13.77□□□□□ -0.21
CCDC88C-212ENST00000556767 FAM196BA6NMK8 535 aa13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 GPAA1O43292 621 aa13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 AOC2O75106 756 aa13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 SLURP2P0DP57 97 aa13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 ZMYM1Q5SVZ6 1142 aa13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 RASAL3Q86YV0 1011 aa13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 ZKSCAN4Q969J2 545 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 SEC62Q99442 399 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 FOCADQ5VW36 1801 aa13.76□□□□□ -0.21
CCDC88C-212ENST00000556767 COL2A1P02458 1487 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 MYH1P12882 1939 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 APPP05067 770 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 SLC10A3P09131 477 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 INPP5BP32019 993 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 NOGQ13253 232 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 VGLL4Q14135 290 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 TTC6Q86TZ1 520 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 SKAP1Q86WV1 359 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 AMOTL1Q8IY63 956 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 STRBPQ96SI9 672 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 DCP1AQ9NPI6 582 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 DIAPH3Q9NSV4 1193 aa13.75□□□□□ -0.21
CCDC88C-212ENST00000556767 NAV1Q8NEY1 1877 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms