RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 LRRC4CQ9HCJ2 640 aa9.33□□□□□ -0.92
PRPF39-209ENST00000556353 ANGEL1Q9UNK9 670 aaKnown RBP9.33□□□□□ -0.92
PRPF39-209ENST00000556353 PRPF40AO75400 957 aaKnown RBP9.32□□□□□ -0.92
PRPF39-209ENST00000556353 GNA15P30679 374 aa9.32□□□□□ -0.92
PRPF39-209ENST00000556353 ERVK-24P63145 666 aa9.32□□□□□ -0.92
PRPF39-209ENST00000556353 COL19A1Q14993 1142 aa9.32□□□□□ -0.92
PRPF39-209ENST00000556353 LRRC14Q15048 493 aa9.32□□□□□ -0.92
PRPF39-209ENST00000556353 GRIN3AQ8TCU5 1115 aa9.32□□□□□ -0.92
PRPF39-209ENST00000556353 SSU72Q9NP77 194 aaKnown RBP9.32□□□□□ -0.92
PRPF39-209ENST00000556353 ANKRD33BA6NCL7 494 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 TRIM37O94972 964 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 IRAK1P51617 712 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 CDK5R2Q13319 367 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 CYP27C1Q4G0S4 372 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 LLGL2Q6P1M3 1020 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 PSMG3-AS1Q96PY0 264 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 CACNA2D2Q9NY47 1150 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 PCOLCE2Q9UKZ9 415 aa9.31□□□□□ -0.92
PRPF39-209ENST00000556353 PRNPP04156 253 aa9.3□□□□□ -0.92
PRPF39-209ENST00000556353 EIF4BP23588 611 aaKnown RBP9.3□□□□□ -0.92
PRPF39-209ENST00000556353 EAPPQ56P03 285 aaPredicted RBP9.3□□□□□ -0.92
PRPF39-209ENST00000556353 MPRIPQ6WCQ1 1025 aa9.3□□□□□ -0.92
PRPF39-209ENST00000556353 RNF214Q8ND24 703 aa9.3□□□□□ -0.92
PRPF39-209ENST00000556353 BSDC1Q9NW68 430 aaPredicted RBP9.3□□□□□ -0.92
PRPF39-209ENST00000556353 CYP8B1Q9UNU6 501 aa9.3□□□□□ -0.92
PRPF39-209ENST00000556353 TTF2Q9UNY4 1162 aaKnown RBP9.3□□□□□ -0.92
PRPF39-209ENST00000556353 NEFMP07197 916 aa9.29□□□□□ -0.92
PRPF39-209ENST00000556353 CELA3AP09093 270 aa9.29□□□□□ -0.92
PRPF39-209ENST00000556353 PCNX4Q63HM2 1172 aa9.29□□□□□ -0.92
PRPF39-209ENST00000556353 SCARA3Q6AZY7 606 aa9.29□□□□□ -0.92
PRPF39-209ENST00000556353 VSIG10LQ86VR7 867 aa9.29□□□□□ -0.92
PRPF39-209ENST00000556353 ISL2Q96A47 359 aa9.29□□□□□ -0.92
PRPF39-209ENST00000556353 CCDC39Q9UFE4 941 aa9.29□□□□□ -0.92
PRPF39-209ENST00000556353 FAM87AP0C7U9 286 aa9.28□□□□□ -0.92
PRPF39-209ENST00000556353 MCTP1Q6DN14 999 aa9.28□□□□□ -0.92
PRPF39-209ENST00000556353 PICK1Q9NRD5 415 aa9.28□□□□□ -0.92
PRPF39-209ENST00000556353 ZC3H7BQ9UGR2 993 aaKnown RBP9.28□□□□□ -0.92
PRPF39-209ENST00000556353 RASIP1Q5U651 963 aa9.27□□□□□ -0.93
PRPF39-209ENST00000556353 SV2BQ7L1I2 683 aa9.27□□□□□ -0.93
PRPF39-209ENST00000556353 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.27□□□□□ -0.93
PRPF39-209ENST00000556353 DUSP9Q99956 384 aaKnown RBP9.27□□□□□ -0.93
PRPF39-209ENST00000556353 KRTAP4-8Q9BYQ9 185 aa9.27□□□□□ -0.93
PRPF39-209ENST00000556353 PCDHA4Q9UN74 947 aa9.27□□□□□ -0.93
PRPF39-209ENST00000556353 CSADQ9Y600 493 aa9.27□□□□□ -0.93
PRPF39-209ENST00000556353 AK5Q9Y6K8 562 aa9.27□□□□□ -0.93
PRPF39-209ENST00000556353 DCDC2CA8MYV0 355 aa9.26□□□□□ -0.93
PRPF39-209ENST00000556353 PPM1JQ5JR12 505 aa9.26□□□□□ -0.93
PRPF39-209ENST00000556353 FBXL18Q96ME1 805 aa9.26□□□□□ -0.93
PRPF39-209ENST00000556353 COL17A1Q9UMD9 1497 aaPredicted RBP9.26□□□□□ -0.93
PRPF39-209ENST00000556353 C12orf40Q86WS4 652 aa9.24□□□□□ -0.93
PRPF39-209ENST00000556353 FLCNQ8NFG4 579 aa9.24□□□□□ -0.93
PRPF39-209ENST00000556353 DUSP23Q9BVJ7 150 aa9.24□□□□□ -0.93
PRPF39-209ENST00000556353 FANCGO15287 622 aa9.23□□□□□ -0.93
PRPF39-209ENST00000556353 LEFTY1O75610 366 aa9.23□□□□□ -0.93
PRPF39-209ENST00000556353 CCDC85BQ15834 202 aaPredicted RBP9.23□□□□□ -0.93
PRPF39-209ENST00000556353 TTBK2Q6IQ55 1244 aa9.23□□□□□ -0.93
PRPF39-209ENST00000556353 TP53INP2Q8IXH6 220 aa9.23□□□□□ -0.93
PRPF39-209ENST00000556353 ABI1Q8IZP0 508 aa9.23□□□□□ -0.93
PRPF39-209ENST00000556353 ELMO3Q96BJ8 720 aa9.23□□□□□ -0.93
PRPF39-209ENST00000556353 NTF4P34130 210 aa9.22□□□□□ -0.93
PRPF39-209ENST00000556353 RING1Q06587 406 aa9.22□□□□□ -0.93
PRPF39-209ENST00000556353 DNAJC14Q6Y2X3 702 aaPredicted RBP9.22□□□□□ -0.93
PRPF39-209ENST00000556353 NPAS4Q8IUM7 802 aa9.22□□□□□ -0.93
PRPF39-209ENST00000556353 TOP6BLQ8N6T0 577 aa9.22□□□□□ -0.93
PRPF39-209ENST00000556353 RNF19AQ9NV58 838 aa9.22□□□□□ -0.93
PRPF39-209ENST00000556353 TAL1P17542 331 aaPredicted RBP9.21□□□□□ -0.94
PRPF39-209ENST00000556353 ZBTB37Q5TC79 503 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 NFXL1Q6ZNB6 911 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 ARHGAP27Q6ZUM4 889 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 CDC37L1Q7L3B6 337 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 FAM181AQ8N9Y4 354 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 KCT2Q8NC54 265 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 NETO1Q8TDF5 533 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 PARP2Q9UGN5 583 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 ADGRE2Q9UHX3 823 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 SLC5A6Q9Y289 635 aa9.21□□□□□ -0.94
PRPF39-209ENST00000556353 LMNB1P20700 586 aa9.2□□□□□ -0.94
PRPF39-209ENST00000556353 STK11IPQ8N1F8 1099 aa9.2□□□□□ -0.94
PRPF39-209ENST00000556353 AGBL5Q8NDL9 886 aa9.2□□□□□ -0.94
PRPF39-209ENST00000556353 PTPN11Q06124 597 aaPredicted RBP9.19□□□□□ -0.94
PRPF39-209ENST00000556353 PSMD2Q13200 908 aa9.19□□□□□ -0.94
PRPF39-209ENST00000556353 INPP5AQ14642 412 aa9.19□□□□□ -0.94
PRPF39-209ENST00000556353 LRFN4Q6PJG9 635 aa9.19□□□□□ -0.94
PRPF39-209ENST00000556353 HDXQ7Z353 690 aa9.19□□□□□ -0.94
PRPF39-209ENST00000556353 PLD6Q8N2A8 252 aaKnown RBP9.19□□□□□ -0.94
PRPF39-209ENST00000556353 BCL7CQ8WUZ0 217 aaPredicted RBP9.19□□□□□ -0.94
PRPF39-209ENST00000556353 GAL3ST3Q96A11 431 aa9.19□□□□□ -0.94
PRPF39-209ENST00000556353 MISP3Q96FF7 219 aa9.19□□□□□ -0.94
PRPF39-209ENST00000556353 MKNK2Q9HBH9 465 aa9.19□□□□□ -0.94
PRPF39-209ENST00000556353 PAK6Q9NQU5 681 aaPredicted RBP9.19□□□□□ -0.94
PRPF39-209ENST00000556353 PRDM10Q9NQV6 1147 aa9.19□□□□□ -0.94
PRPF39-209ENST00000556353 PRAMEF27A3QJZ7 478 aa9.18□□□□□ -0.94
PRPF39-209ENST00000556353 RPS26P62854 115 aaKnown RBP9.18□□□□□ -0.94
PRPF39-209ENST00000556353 XPCQ01831 940 aaPredicted RBP9.18□□□□□ -0.94
PRPF39-209ENST00000556353 UBE3DQ7Z6J8 389 aa9.18□□□□□ -0.94
PRPF39-209ENST00000556353 ZNF507Q8TCN5 953 aa9.18□□□□□ -0.94
PRPF39-209ENST00000556353 PLPPR2Q96GM1 343 aa9.18□□□□□ -0.94
PRPF39-209ENST00000556353 PAX4O43316 350 aa9.17□□□□□ -0.94
PRPF39-209ENST00000556353 DAB2P98082 770 aa9.17□□□□□ -0.94
PRPF39-209ENST00000556353 CYFIP1Q7L576 1253 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms